Hb_001741_040

Information

Type rubber biosynthesis
Description Gene Name: REF3
Location Contig1741: 29448-40351
Sequence    

Annotation

kegg
ID -
description -
nr
ID AAP46159.1
description REF-like stress related protein 1 [Hevea brasiliensis]
swissprot
ID P15252
description Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2
trembl
ID Q6XNP4
description REF-like stress related protein 1 OS=Hevea brasiliensis GN=RLP1 PE=2 SV=1
Gene Ontology
ID GO:0003746
description rubber elongation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16590: 25601-75427 , PASA_asmbl_16592: 29631-59542 , PASA_asmbl_16594: 29631-29993 , PASA_asmbl_16595: 37012-37606
cDNA
(Sanger)
(ID:Location)		 011_E23.ab1: 29699-59345 , 012_O18.ab1: 29688-29878 , 019_G10.ab1: 29647-29993 , 035_H05.ab1: 29647-29993 , 051_N09.ab1: 29699-59345

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_040 0.0 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
2 Hb_003913_140 0.1310657661 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
3 Hb_000227_200 0.14860948 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
4 Hb_000103_110 0.1594964805 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
5 Hb_002450_070 0.1709129849 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
6 Hb_001638_210 0.1857954402 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000972_010 0.191329301 - - PREDICTED: kinesin KP1 [Jatropha curcas]
8 Hb_001902_120 0.1943980958 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
9 Hb_173281_010 0.1957699802 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
10 Hb_002045_200 0.1991300797 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
11 Hb_000545_170 0.1998170359 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
12 Hb_000111_010 0.2004630933 - - DNA-directed RNA polymerase, putative [Ricinus communis]
13 Hb_000856_370 0.2025042672 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
14 Hb_000784_040 0.2038095493 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
15 Hb_000042_240 0.2048181472 - - -
16 Hb_001425_050 0.2048966758 - - -
17 Hb_005568_010 0.2060358961 - - -
18 Hb_052941_010 0.208898892 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
19 Hb_000157_040 0.2097056861 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
20 Hb_042223_010 0.2105771578 - - Protein Z, putative [Ricinus communis]

Gene co-expression network

sample Hb_001741_040 Hb_001741_040 Hb_003913_140 Hb_003913_140 Hb_001741_040--Hb_003913_140 Hb_000227_200 Hb_000227_200 Hb_001741_040--Hb_000227_200 Hb_000103_110 Hb_000103_110 Hb_001741_040--Hb_000103_110 Hb_002450_070 Hb_002450_070 Hb_001741_040--Hb_002450_070 Hb_001638_210 Hb_001638_210 Hb_001741_040--Hb_001638_210 Hb_000972_010 Hb_000972_010 Hb_001741_040--Hb_000972_010 Hb_001902_120 Hb_001902_120 Hb_003913_140--Hb_001902_120 Hb_000545_170 Hb_000545_170 Hb_003913_140--Hb_000545_170 Hb_173281_010 Hb_173281_010 Hb_003913_140--Hb_173281_010 Hb_002045_200 Hb_002045_200 Hb_003913_140--Hb_002045_200 Hb_003913_140--Hb_002450_070 Hb_000784_040 Hb_000784_040 Hb_000227_200--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_005914_070 Hb_005914_070 Hb_000227_200--Hb_005914_070 Hb_091433_040 Hb_091433_040 Hb_000227_200--Hb_091433_040 Hb_042223_010 Hb_042223_010 Hb_000227_200--Hb_042223_010 Hb_000368_060 Hb_000368_060 Hb_000103_110--Hb_000368_060 Hb_004324_050 Hb_004324_050 Hb_000103_110--Hb_004324_050 Hb_000562_040 Hb_000562_040 Hb_000103_110--Hb_000562_040 Hb_000784_030 Hb_000784_030 Hb_000103_110--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_000103_110--Hb_000141_030 Hb_000157_040 Hb_000157_040 Hb_000103_110--Hb_000157_040 Hb_002450_070--Hb_000545_170 Hb_000788_080 Hb_000788_080 Hb_002450_070--Hb_000788_080 Hb_001276_060 Hb_001276_060 Hb_002450_070--Hb_001276_060 Hb_001258_140 Hb_001258_140 Hb_002450_070--Hb_001258_140 Hb_000261_450 Hb_000261_450 Hb_002450_070--Hb_000261_450 Hb_000249_090 Hb_000249_090 Hb_001638_210--Hb_000249_090 Hb_006018_030 Hb_006018_030 Hb_001638_210--Hb_006018_030 Hb_000120_650 Hb_000120_650 Hb_001638_210--Hb_000120_650 Hb_075449_050 Hb_075449_050 Hb_001638_210--Hb_075449_050 Hb_048937_030 Hb_048937_030 Hb_001638_210--Hb_048937_030 Hb_004871_050 Hb_004871_050 Hb_000972_010--Hb_004871_050 Hb_017124_020 Hb_017124_020 Hb_000972_010--Hb_017124_020 Hb_000972_010--Hb_000103_110 Hb_000972_010--Hb_000120_650 Hb_000120_120 Hb_000120_120 Hb_000972_010--Hb_000120_120 Hb_000972_010--Hb_000157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2226.26 50.8167 10.6328 385.362 607.922 1073.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22057.5 14129.1 36993.3 980.282 357.056

CAGE analysis