Hb_001587_210

Information

Type -
Description -
Location Contig1587: 146147-148575
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14170g
description POPTRDRAFT_574570; hypothetical protein
nr
ID XP_012092438.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
swissprot
ID O64477
description G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1
trembl
ID A0A061E4J3
description Serine/threonine-protein kinase OS=Theobroma cacao GN=TCM_007853 PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase at2g19130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_210 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
2 Hb_000227_200 0.1477619515 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
3 Hb_042223_010 0.1782198072 - - Protein Z, putative [Ricinus communis]
4 Hb_000784_040 0.1934741602 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
5 Hb_003786_090 0.1941870185 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
6 Hb_091433_040 0.2122561439 - - PREDICTED: josephin-like protein [Jatropha curcas]
7 Hb_000450_020 0.2196304231 - - conserved hypothetical protein [Ricinus communis]
8 Hb_156473_010 0.2205346777 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
9 Hb_000172_570 0.2212388938 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
10 Hb_008790_050 0.2234572903 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003032_100 0.2284798207 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
12 Hb_010174_070 0.2323147059 - - -
13 Hb_001741_040 0.2335413481 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
14 Hb_012053_040 0.2336688812 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
15 Hb_005914_070 0.2347690815 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007426_050 0.2352950727 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
17 Hb_000042_240 0.2358429061 - - -
18 Hb_000111_010 0.2443320833 - - DNA-directed RNA polymerase, putative [Ricinus communis]
19 Hb_000995_070 0.2588427469 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_100873_030 0.2595143794 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]

Gene co-expression network

sample Hb_001587_210 Hb_001587_210 Hb_000227_200 Hb_000227_200 Hb_001587_210--Hb_000227_200 Hb_042223_010 Hb_042223_010 Hb_001587_210--Hb_042223_010 Hb_000784_040 Hb_000784_040 Hb_001587_210--Hb_000784_040 Hb_003786_090 Hb_003786_090 Hb_001587_210--Hb_003786_090 Hb_091433_040 Hb_091433_040 Hb_001587_210--Hb_091433_040 Hb_000450_020 Hb_000450_020 Hb_001587_210--Hb_000450_020 Hb_000227_200--Hb_000784_040 Hb_005914_070 Hb_005914_070 Hb_000227_200--Hb_005914_070 Hb_001741_040 Hb_001741_040 Hb_000227_200--Hb_001741_040 Hb_000227_200--Hb_091433_040 Hb_000227_200--Hb_042223_010 Hb_156473_010 Hb_156473_010 Hb_042223_010--Hb_156473_010 Hb_100873_030 Hb_100873_030 Hb_042223_010--Hb_100873_030 Hb_000042_240 Hb_000042_240 Hb_042223_010--Hb_000042_240 Hb_042223_010--Hb_000784_040 Hb_000784_040--Hb_091433_040 Hb_000995_070 Hb_000995_070 Hb_000784_040--Hb_000995_070 Hb_000784_040--Hb_005914_070 Hb_003599_070 Hb_003599_070 Hb_000784_040--Hb_003599_070 Hb_008790_050 Hb_008790_050 Hb_003786_090--Hb_008790_050 Hb_003786_090--Hb_000784_040 Hb_003786_090--Hb_000450_020 Hb_001741_130 Hb_001741_130 Hb_003786_090--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_003786_090--Hb_163268_010 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_091433_040--Hb_000450_020 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_001348_230 Hb_001348_230 Hb_000450_020--Hb_001348_230 Hb_001143_070 Hb_001143_070 Hb_000450_020--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_000450_020--Hb_000103_030 Hb_012053_040 Hb_012053_040 Hb_000450_020--Hb_012053_040 Hb_027346_020 Hb_027346_020 Hb_000450_020--Hb_027346_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0212924 0 0 0.0399667 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.121032 0.247595 0.540799 0.015164 0

CAGE analysis