Hb_001741_130

Information

Type -
Description -
Location Contig1741: 159496-161822
Sequence    

Annotation

kegg
ID gmx:102668027
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_011656076.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID V7CI57
description Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G099800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_130 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
2 Hb_163268_010 0.0001653294 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
3 Hb_008505_020 0.0190727256 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_033835_020 0.020124792 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_005531_010 0.027442861 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
6 Hb_000756_020 0.0376929538 - - BnaA05g19440D [Brassica napus]
7 Hb_002240_040 0.054354377 - - -
8 Hb_167711_040 0.1332286392 - - PREDICTED: cucumisin-like [Jatropha curcas]
9 Hb_039229_010 0.1389793093 - - -
10 Hb_003786_090 0.2055474472 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
11 Hb_000249_120 0.2112022805 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
12 Hb_008790_050 0.2200333494 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002725_060 0.2373216326 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
14 Hb_004994_110 0.2403603433 - - -
15 Hb_168925_010 0.244821324 - - -
16 Hb_000068_030 0.2540304227 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
17 Hb_005072_010 0.2581382916 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
18 Hb_012338_020 0.2654340915 - - -
19 Hb_001141_480 0.2943939124 - - -
20 Hb_001959_150 0.2964895274 - - -

Gene co-expression network

sample Hb_001741_130 Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_001741_130--Hb_163268_010 Hb_008505_020 Hb_008505_020 Hb_001741_130--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_001741_130--Hb_033835_020 Hb_005531_010 Hb_005531_010 Hb_001741_130--Hb_005531_010 Hb_000756_020 Hb_000756_020 Hb_001741_130--Hb_000756_020 Hb_002240_040 Hb_002240_040 Hb_001741_130--Hb_002240_040 Hb_163268_010--Hb_008505_020 Hb_163268_010--Hb_033835_020 Hb_163268_010--Hb_005531_010 Hb_163268_010--Hb_000756_020 Hb_163268_010--Hb_002240_040 Hb_008505_020--Hb_033835_020 Hb_008505_020--Hb_005531_010 Hb_008505_020--Hb_002240_040 Hb_008505_020--Hb_000756_020 Hb_033835_020--Hb_005531_010 Hb_033835_020--Hb_002240_040 Hb_033835_020--Hb_000756_020 Hb_005531_010--Hb_002240_040 Hb_005531_010--Hb_000756_020 Hb_000756_020--Hb_002240_040 Hb_039229_010 Hb_039229_010 Hb_002240_040--Hb_039229_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0830597 0.144599 0 0

CAGE analysis