Hb_005531_010

Information

Type -
Description -
Location Contig5531: 10749-11477
Sequence    

Annotation

kegg
ID cic:CICLE_v10033008mg
description hypothetical protein
nr
ID XP_006436649.1
description hypothetical protein CICLE_v10033008mg [Citrus clementina]
swissprot
ID Q6VAK4
description Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1
trembl
ID A0A067DZ75
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048204mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005531_010 0.0 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
2 Hb_033835_020 0.0073197596 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_008505_020 0.0083719662 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_002240_040 0.0269288752 - - -
5 Hb_001741_130 0.027442861 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
6 Hb_163268_010 0.027608139 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
7 Hb_000756_020 0.065109017 - - BnaA05g19440D [Brassica napus]
8 Hb_039229_010 0.111738201 - - -
9 Hb_167711_040 0.16045299 - - PREDICTED: cucumisin-like [Jatropha curcas]
10 Hb_003786_090 0.2072793634 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
11 Hb_008790_050 0.2105538053 - - conserved hypothetical protein [Ricinus communis]
12 Hb_168925_010 0.2181711919 - - -
13 Hb_000249_120 0.2247611582 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
14 Hb_000068_030 0.2540669726 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
15 Hb_005072_010 0.2589086988 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
16 Hb_002725_060 0.2641533675 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
17 Hb_012338_020 0.2656020883 - - -
18 Hb_004994_110 0.267177783 - - -
19 Hb_001141_480 0.2968751175 - - -
20 Hb_001959_150 0.3013319035 - - -

Gene co-expression network

sample Hb_005531_010 Hb_005531_010 Hb_033835_020 Hb_033835_020 Hb_005531_010--Hb_033835_020 Hb_008505_020 Hb_008505_020 Hb_005531_010--Hb_008505_020 Hb_002240_040 Hb_002240_040 Hb_005531_010--Hb_002240_040 Hb_001741_130 Hb_001741_130 Hb_005531_010--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_005531_010--Hb_163268_010 Hb_000756_020 Hb_000756_020 Hb_005531_010--Hb_000756_020 Hb_033835_020--Hb_008505_020 Hb_033835_020--Hb_001741_130 Hb_033835_020--Hb_163268_010 Hb_033835_020--Hb_002240_040 Hb_033835_020--Hb_000756_020 Hb_008505_020--Hb_001741_130 Hb_008505_020--Hb_163268_010 Hb_008505_020--Hb_002240_040 Hb_008505_020--Hb_000756_020 Hb_002240_040--Hb_001741_130 Hb_002240_040--Hb_163268_010 Hb_039229_010 Hb_039229_010 Hb_002240_040--Hb_039229_010 Hb_001741_130--Hb_163268_010 Hb_001741_130--Hb_000756_020 Hb_163268_010--Hb_000756_020 Hb_000756_020--Hb_002240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.811156 1.6172 0 0

CAGE analysis