Hb_000756_020

Information

Type -
Description -
Location Contig756: 7679-8431
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa025227mg
description hypothetical protein
nr
ID CDY38643.1
description BnaA05g19440D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078HPD9
description BnaA05g19440D protein OS=Brassica napus GN=BnaA05g19440D PE=4 SV=1
Gene Ontology
ID GO:0047213
description anthocyanidin 3-o-glucosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000756_020 0.0 - - BnaA05g19440D [Brassica napus]
2 Hb_163268_010 0.0375277155 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
3 Hb_001741_130 0.0376929538 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
4 Hb_008505_020 0.0567495533 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
5 Hb_033835_020 0.0578004008 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_005531_010 0.065109017 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
7 Hb_002240_040 0.0919706682 - - -
8 Hb_167711_040 0.0957088526 - - PREDICTED: cucumisin-like [Jatropha curcas]
9 Hb_039229_010 0.1762653982 - - -
10 Hb_000249_120 0.1970453853 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
11 Hb_002725_060 0.200254182 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
12 Hb_004994_110 0.2033102437 - - -
13 Hb_003786_090 0.2088488296 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
14 Hb_008790_050 0.2373526412 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000068_030 0.2584530934 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
16 Hb_005072_010 0.2614879915 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
17 Hb_012338_020 0.2694620661 - - -
18 Hb_168925_010 0.2812257611 - - -
19 Hb_000892_070 0.2844206259 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
20 Hb_001959_150 0.2935439148 - - -

Gene co-expression network

sample Hb_000756_020 Hb_000756_020 Hb_163268_010 Hb_163268_010 Hb_000756_020--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_000756_020--Hb_001741_130 Hb_008505_020 Hb_008505_020 Hb_000756_020--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_000756_020--Hb_033835_020 Hb_005531_010 Hb_005531_010 Hb_000756_020--Hb_005531_010 Hb_002240_040 Hb_002240_040 Hb_000756_020--Hb_002240_040 Hb_163268_010--Hb_001741_130 Hb_163268_010--Hb_008505_020 Hb_163268_010--Hb_033835_020 Hb_163268_010--Hb_005531_010 Hb_163268_010--Hb_002240_040 Hb_001741_130--Hb_008505_020 Hb_001741_130--Hb_033835_020 Hb_001741_130--Hb_005531_010 Hb_001741_130--Hb_002240_040 Hb_008505_020--Hb_033835_020 Hb_008505_020--Hb_005531_010 Hb_008505_020--Hb_002240_040 Hb_033835_020--Hb_005531_010 Hb_033835_020--Hb_002240_040 Hb_005531_010--Hb_002240_040 Hb_039229_010 Hb_039229_010 Hb_002240_040--Hb_039229_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.2674 0.387904 0 0

CAGE analysis