Hb_008505_020

Information

Type -
Description -
Location Contig8505: 23897-27602
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb019121mg
description hypothetical protein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID P27401
description Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2
trembl
ID Q5JPZ7
description OSJNBa0004L19.17 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0004L19.17 PE=4 SV=1
Gene Ontology
ID GO:0046872
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008505_020 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_033835_020 0.001052234 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_005531_010 0.0083719662 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
4 Hb_001741_130 0.0190727256 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
5 Hb_163268_010 0.0192380303 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
6 Hb_002240_040 0.0352973352 - - -
7 Hb_000756_020 0.0567495533 - - BnaA05g19440D [Brassica napus]
8 Hb_039229_010 0.1200557834 - - -
9 Hb_167711_040 0.1521580448 - - PREDICTED: cucumisin-like [Jatropha curcas]
10 Hb_003786_090 0.2063825741 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
11 Hb_008790_050 0.2131354641 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000249_120 0.2203704449 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
13 Hb_168925_010 0.2263135852 - - -
14 Hb_000068_030 0.2537619443 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
15 Hb_002725_060 0.2559839084 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
16 Hb_005072_010 0.2583859566 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
17 Hb_004994_110 0.2590128335 - - -
18 Hb_012338_020 0.2652715461 - - -
19 Hb_001141_480 0.2958744582 - - -
20 Hb_001959_150 0.2996206181 - - -

Gene co-expression network

sample Hb_008505_020 Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_008505_020--Hb_033835_020 Hb_005531_010 Hb_005531_010 Hb_008505_020--Hb_005531_010 Hb_001741_130 Hb_001741_130 Hb_008505_020--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_008505_020--Hb_163268_010 Hb_002240_040 Hb_002240_040 Hb_008505_020--Hb_002240_040 Hb_000756_020 Hb_000756_020 Hb_008505_020--Hb_000756_020 Hb_033835_020--Hb_005531_010 Hb_033835_020--Hb_001741_130 Hb_033835_020--Hb_163268_010 Hb_033835_020--Hb_002240_040 Hb_033835_020--Hb_000756_020 Hb_005531_010--Hb_002240_040 Hb_005531_010--Hb_001741_130 Hb_005531_010--Hb_163268_010 Hb_005531_010--Hb_000756_020 Hb_001741_130--Hb_163268_010 Hb_001741_130--Hb_000756_020 Hb_001741_130--Hb_002240_040 Hb_163268_010--Hb_000756_020 Hb_163268_010--Hb_002240_040 Hb_039229_010 Hb_039229_010 Hb_002240_040--Hb_039229_010 Hb_000756_020--Hb_002240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0116351 0.0222504 0 0

CAGE analysis