Hb_002240_040

Information

Type -
Description -
Location Contig2240: 28759-28974
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002240_040 0.0 - - -
2 Hb_005531_010 0.0269288752 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
3 Hb_033835_020 0.0342456574 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_008505_020 0.0352973352 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
5 Hb_001741_130 0.054354377 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
6 Hb_163268_010 0.0545195002 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
7 Hb_039229_010 0.0849386188 - - -
8 Hb_000756_020 0.0919706682 - - BnaA05g19440D [Brassica napus]
9 Hb_167711_040 0.1870699937 - - PREDICTED: cucumisin-like [Jatropha curcas]
10 Hb_168925_010 0.1919012929 - - -
11 Hb_008790_050 0.2042516713 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003786_090 0.2122911238 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
13 Hb_000249_120 0.2402064255 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
14 Hb_000068_030 0.2567823466 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
15 Hb_005072_010 0.2622786964 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
16 Hb_012338_020 0.2683132802 - - -
17 Hb_002725_060 0.2903321238 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
18 Hb_011249_040 0.291850974 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
19 Hb_004994_110 0.2933411407 - - -
20 Hb_156473_010 0.2953106428 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]

Gene co-expression network

sample Hb_002240_040 Hb_002240_040 Hb_005531_010 Hb_005531_010 Hb_002240_040--Hb_005531_010 Hb_033835_020 Hb_033835_020 Hb_002240_040--Hb_033835_020 Hb_008505_020 Hb_008505_020 Hb_002240_040--Hb_008505_020 Hb_001741_130 Hb_001741_130 Hb_002240_040--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_002240_040--Hb_163268_010 Hb_039229_010 Hb_039229_010 Hb_002240_040--Hb_039229_010 Hb_005531_010--Hb_033835_020 Hb_005531_010--Hb_008505_020 Hb_005531_010--Hb_001741_130 Hb_005531_010--Hb_163268_010 Hb_000756_020 Hb_000756_020 Hb_005531_010--Hb_000756_020 Hb_033835_020--Hb_008505_020 Hb_033835_020--Hb_001741_130 Hb_033835_020--Hb_163268_010 Hb_033835_020--Hb_000756_020 Hb_008505_020--Hb_001741_130 Hb_008505_020--Hb_163268_010 Hb_008505_020--Hb_000756_020 Hb_001741_130--Hb_163268_010 Hb_001741_130--Hb_000756_020 Hb_163268_010--Hb_000756_020 Hb_168925_010 Hb_168925_010 Hb_039229_010--Hb_168925_010 Hb_039229_010--Hb_005531_010 Hb_039229_010--Hb_033835_020 Hb_039229_010--Hb_008505_020 Hb_039229_010--Hb_001741_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.845152 1.9306 0 0

CAGE analysis