Hb_000450_020

Information

Type -
Description -
Location Contig450: 23335-31420
Sequence    

Annotation

kegg
ID rcu:RCOM_1524280
description hypothetical protein
nr
ID XP_002513170.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHF1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1524280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43157: 30279-30930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000450_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001348_230 0.1466518906 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
3 Hb_091433_040 0.1602757576 - - PREDICTED: josephin-like protein [Jatropha curcas]
4 Hb_001143_070 0.1666183338 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
5 Hb_000103_030 0.1722637321 - - hypothetical protein VITISV_021700 [Vitis vinifera]
6 Hb_012053_040 0.1801311245 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
7 Hb_027346_020 0.1830160748 - - -
8 Hb_007426_050 0.1857848929 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
9 Hb_005914_070 0.1940602417 - - conserved hypothetical protein [Ricinus communis]
10 Hb_039946_010 0.1951765053 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
11 Hb_002290_050 0.1953242151 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012586_020 0.195470887 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
13 Hb_000227_200 0.1974352668 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
14 Hb_003786_090 0.2016030566 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
15 Hb_089100_050 0.204058051 - - -
16 Hb_000784_040 0.2044817941 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
17 Hb_000352_160 0.2052875972 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004064_020 0.2087737195 - - hypothetical protein M569_06853, partial [Genlisea aurea]
19 Hb_113906_010 0.2090645653 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
20 Hb_004942_020 0.2113073369 - - Potassium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000450_020 Hb_000450_020 Hb_001348_230 Hb_001348_230 Hb_000450_020--Hb_001348_230 Hb_091433_040 Hb_091433_040 Hb_000450_020--Hb_091433_040 Hb_001143_070 Hb_001143_070 Hb_000450_020--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_000450_020--Hb_000103_030 Hb_012053_040 Hb_012053_040 Hb_000450_020--Hb_012053_040 Hb_027346_020 Hb_027346_020 Hb_000450_020--Hb_027346_020 Hb_000352_160 Hb_000352_160 Hb_001348_230--Hb_000352_160 Hb_002588_040 Hb_002588_040 Hb_001348_230--Hb_002588_040 Hb_001369_210 Hb_001369_210 Hb_001348_230--Hb_001369_210 Hb_001146_060 Hb_001146_060 Hb_001348_230--Hb_001146_060 Hb_000563_260 Hb_000563_260 Hb_001348_230--Hb_000563_260 Hb_001348_230--Hb_001143_070 Hb_005914_070 Hb_005914_070 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_000227_200 Hb_000227_200 Hb_091433_040--Hb_000227_200 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_000784_040 Hb_000784_040 Hb_091433_040--Hb_000784_040 Hb_002989_040 Hb_002989_040 Hb_001143_070--Hb_002989_040 Hb_001143_070--Hb_000103_030 Hb_002290_050 Hb_002290_050 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020 Hb_001143_070--Hb_000352_160 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_004461_020 Hb_004461_020 Hb_000103_030--Hb_004461_020 Hb_000103_030--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050 Hb_001425_070 Hb_001425_070 Hb_000103_030--Hb_001425_070 Hb_007426_050 Hb_007426_050 Hb_012053_040--Hb_007426_050 Hb_001511_140 Hb_001511_140 Hb_012053_040--Hb_001511_140 Hb_000788_080 Hb_000788_080 Hb_012053_040--Hb_000788_080 Hb_001776_170 Hb_001776_170 Hb_012053_040--Hb_001776_170 Hb_012053_040--Hb_001143_070 Hb_012053_040--Hb_000111_010 Hb_159352_010 Hb_159352_010 Hb_027346_020--Hb_159352_010 Hb_000720_190 Hb_000720_190 Hb_027346_020--Hb_000720_190 Hb_008864_060 Hb_008864_060 Hb_027346_020--Hb_008864_060 Hb_001276_060 Hb_001276_060 Hb_027346_020--Hb_001276_060 Hb_002326_170 Hb_002326_170 Hb_027346_020--Hb_002326_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.297076 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10556 3.28248 3.09528 0.258004 0

CAGE analysis