Hb_001369_210

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1369: 226357-232000
Sequence    

Annotation

kegg
ID rcu:RCOM_1500710
description zinc finger protein, putative
nr
ID KDP22438.1
description hypothetical protein JCGZ_26269 [Jatropha curcas]
swissprot
ID Q9M202
description Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1
trembl
ID A0A067JI04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_210 0.0 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
2 Hb_000352_160 0.0632752122 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001348_230 0.0970132958 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
4 Hb_001146_060 0.1086911782 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
5 Hb_002588_040 0.1111990007 - - Pathogenesis-related protein 1 [Theobroma cacao]
6 Hb_001767_050 0.127783927 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000563_260 0.1536690933 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
8 Hb_001143_070 0.1638174384 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
9 Hb_010589_050 0.1841552389 - - -
10 Hb_001247_330 0.1846465567 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
11 Hb_089100_050 0.1869584351 - - -
12 Hb_000103_030 0.1893194428 - - hypothetical protein VITISV_021700 [Vitis vinifera]
13 Hb_002989_040 0.1971080875 - - hypothetical protein 1 [Hevea brasiliensis]
14 Hb_000962_080 0.206203997 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
15 Hb_007426_050 0.2111117883 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
16 Hb_029879_090 0.2118531995 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
17 Hb_012586_020 0.2120068875 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
18 Hb_027337_120 0.2130689222 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
19 Hb_004461_020 0.2173153424 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
20 Hb_004942_020 0.2178748645 - - Potassium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_210 Hb_001369_210 Hb_000352_160 Hb_000352_160 Hb_001369_210--Hb_000352_160 Hb_001348_230 Hb_001348_230 Hb_001369_210--Hb_001348_230 Hb_001146_060 Hb_001146_060 Hb_001369_210--Hb_001146_060 Hb_002588_040 Hb_002588_040 Hb_001369_210--Hb_002588_040 Hb_001767_050 Hb_001767_050 Hb_001369_210--Hb_001767_050 Hb_000563_260 Hb_000563_260 Hb_001369_210--Hb_000563_260 Hb_000352_160--Hb_001348_230 Hb_000352_160--Hb_002588_040 Hb_000352_160--Hb_001146_060 Hb_000352_160--Hb_001767_050 Hb_001143_070 Hb_001143_070 Hb_000352_160--Hb_001143_070 Hb_001348_230--Hb_002588_040 Hb_001348_230--Hb_001146_060 Hb_001348_230--Hb_000563_260 Hb_001348_230--Hb_001143_070 Hb_001146_060--Hb_002588_040 Hb_001146_060--Hb_000563_260 Hb_001146_060--Hb_001767_050 Hb_002588_040--Hb_000563_260 Hb_002588_040--Hb_001767_050 Hb_000962_080 Hb_000962_080 Hb_001767_050--Hb_000962_080 Hb_001247_330 Hb_001247_330 Hb_001767_050--Hb_001247_330 Hb_000563_260--Hb_000352_160 Hb_029879_090 Hb_029879_090 Hb_000563_260--Hb_029879_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.796761 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5103 112.235 45.6617 2.81145 0.05329

CAGE analysis