Hb_000962_080

Information

Type -
Description -
Location Contig962: 149633-150115
Sequence    

Annotation

kegg
ID pop:POPTR_0006s20650g
description POPTRDRAFT_561257; hypothetical protein
nr
ID XP_011033217.1
description PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
swissprot
ID O48522
description VQ motif-containing protein 17 OS=Arabidopsis thaliana GN=VQ17 PE=2 SV=1
trembl
ID B9HAC3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s20650g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000962_080 0.0 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
2 Hb_001247_330 0.1288992591 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
3 Hb_023661_060 0.1454354813 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
4 Hb_001767_050 0.1612806162 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000703_050 0.1614595218 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000002_170 0.180059691 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
7 Hb_001369_210 0.206203997 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
8 Hb_001146_060 0.2101635922 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
9 Hb_001214_080 0.2223272671 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
10 Hb_000352_160 0.2298949526 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002588_040 0.2350971908 - - Pathogenesis-related protein 1 [Theobroma cacao]
12 Hb_012573_010 0.2353456386 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
13 Hb_002150_050 0.2418416696 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004968_070 0.2441279307 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002784_150 0.2444625433 - - hypothetical protein POPTR_0001s06620g [Populus trichocarpa]
16 Hb_004994_110 0.2532776783 - - -
17 Hb_051067_010 0.2543317531 - - -
18 Hb_002725_060 0.2559011087 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
19 Hb_034661_020 0.2617720106 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
20 Hb_006277_070 0.2654852404 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000962_080 Hb_000962_080 Hb_001247_330 Hb_001247_330 Hb_000962_080--Hb_001247_330 Hb_023661_060 Hb_023661_060 Hb_000962_080--Hb_023661_060 Hb_001767_050 Hb_001767_050 Hb_000962_080--Hb_001767_050 Hb_000703_050 Hb_000703_050 Hb_000962_080--Hb_000703_050 Hb_000002_170 Hb_000002_170 Hb_000962_080--Hb_000002_170 Hb_001369_210 Hb_001369_210 Hb_000962_080--Hb_001369_210 Hb_001247_330--Hb_000703_050 Hb_001247_330--Hb_001767_050 Hb_001146_060 Hb_001146_060 Hb_001247_330--Hb_001146_060 Hb_001214_080 Hb_001214_080 Hb_001247_330--Hb_001214_080 Hb_001247_330--Hb_001369_210 Hb_023661_060--Hb_000002_170 Hb_000016_070 Hb_000016_070 Hb_023661_060--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_023661_060--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_023661_060--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_023661_060--Hb_000029_230 Hb_001767_050--Hb_001369_210 Hb_000352_160 Hb_000352_160 Hb_001767_050--Hb_000352_160 Hb_001767_050--Hb_001146_060 Hb_002588_040 Hb_002588_040 Hb_001767_050--Hb_002588_040 Hb_004994_110 Hb_004994_110 Hb_000703_050--Hb_004994_110 Hb_002725_060 Hb_002725_060 Hb_000703_050--Hb_002725_060 Hb_000703_050--Hb_001146_060 Hb_000703_050--Hb_001767_050 Hb_006277_070 Hb_006277_070 Hb_000002_170--Hb_006277_070 Hb_002391_330 Hb_002391_330 Hb_000002_170--Hb_002391_330 Hb_034661_020 Hb_034661_020 Hb_000002_170--Hb_034661_020 Hb_012573_010 Hb_012573_010 Hb_000002_170--Hb_012573_010 Hb_001369_210--Hb_000352_160 Hb_001348_230 Hb_001348_230 Hb_001369_210--Hb_001348_230 Hb_001369_210--Hb_001146_060 Hb_001369_210--Hb_002588_040 Hb_000563_260 Hb_000563_260 Hb_001369_210--Hb_000563_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.189096 0.196715 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41148 188.265 28.5436 2.84128 0

CAGE analysis