Hb_006277_070

Information

Type -
Description -
Location Contig6277: 49594-49893
Sequence    

Annotation

kegg
ID rcu:RCOM_1251150
description hypothetical protein
nr
ID XP_002522252.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8D3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51741: 49544-49786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006277_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000002_170 0.1414042603 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
3 Hb_012573_010 0.1542443839 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
4 Hb_003732_040 0.1697539614 - - putative esterase family protein [Populus trichocarpa]
5 Hb_051067_010 0.1745074955 - - -
6 Hb_002391_330 0.1834959686 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015057_030 0.1926863604 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
8 Hb_042871_010 0.1935896698 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
9 Hb_034661_020 0.1984013249 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
10 Hb_147793_010 0.2026907343 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
11 Hb_000062_300 0.2057219162 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
12 Hb_001892_090 0.2073920665 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000002_200 0.2144648842 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
14 Hb_002890_070 0.2149382125 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
15 Hb_014497_080 0.2184452935 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
16 Hb_000164_060 0.2343351587 - - -
17 Hb_023661_060 0.2434715233 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
18 Hb_001627_030 0.2446592198 - - hypothetical protein JCGZ_11752 [Jatropha curcas]
19 Hb_002890_080 0.2468627992 - - conserved hypothetical protein [Ricinus communis]
20 Hb_096292_010 0.2504206279 - - hypothetical protein JCGZ_25718 [Jatropha curcas]

Gene co-expression network

sample Hb_006277_070 Hb_006277_070 Hb_000002_170 Hb_000002_170 Hb_006277_070--Hb_000002_170 Hb_012573_010 Hb_012573_010 Hb_006277_070--Hb_012573_010 Hb_003732_040 Hb_003732_040 Hb_006277_070--Hb_003732_040 Hb_051067_010 Hb_051067_010 Hb_006277_070--Hb_051067_010 Hb_002391_330 Hb_002391_330 Hb_006277_070--Hb_002391_330 Hb_015057_030 Hb_015057_030 Hb_006277_070--Hb_015057_030 Hb_023661_060 Hb_023661_060 Hb_000002_170--Hb_023661_060 Hb_000002_170--Hb_002391_330 Hb_034661_020 Hb_034661_020 Hb_000002_170--Hb_034661_020 Hb_000002_170--Hb_012573_010 Hb_000962_080 Hb_000962_080 Hb_000002_170--Hb_000962_080 Hb_000258_180 Hb_000258_180 Hb_012573_010--Hb_000258_180 Hb_000012_070 Hb_000012_070 Hb_012573_010--Hb_000012_070 Hb_000284_190 Hb_000284_190 Hb_012573_010--Hb_000284_190 Hb_000062_300 Hb_000062_300 Hb_012573_010--Hb_000062_300 Hb_014497_080 Hb_014497_080 Hb_003732_040--Hb_014497_080 Hb_003732_040--Hb_000062_300 Hb_042871_010 Hb_042871_010 Hb_003732_040--Hb_042871_010 Hb_033834_050 Hb_033834_050 Hb_003732_040--Hb_033834_050 Hb_147793_010 Hb_147793_010 Hb_003732_040--Hb_147793_010 Hb_051067_010--Hb_147793_010 Hb_051067_010--Hb_015057_030 Hb_051067_010--Hb_023661_060 Hb_051067_010--Hb_000002_170 Hb_051067_010--Hb_034661_020 Hb_002391_330--Hb_034661_020 Hb_000002_200 Hb_000002_200 Hb_002391_330--Hb_000002_200 Hb_000016_070 Hb_000016_070 Hb_002391_330--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_002391_330--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_002391_330--Hb_000019_160 Hb_001892_090 Hb_001892_090 Hb_015057_030--Hb_001892_090 Hb_000622_070 Hb_000622_070 Hb_015057_030--Hb_000622_070 Hb_002890_080 Hb_002890_080 Hb_015057_030--Hb_002890_080 Hb_015057_030--Hb_000016_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.327978 0.29015 1.03145 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.748587 23.8812 0.419256 1.2316 0

CAGE analysis