Hb_000002_200

Information

Type transcription factor
Description TF Family: ERF
Location Contig2: 342288-342692
Sequence    

Annotation

kegg
ID egr:104427847
description ethylene-responsive transcription factor ERF096-like
nr
ID XP_009113987.1
description PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
swissprot
ID Q9LSX0
description Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1
trembl
ID A0A059D1V2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01537 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf096-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_200 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
2 Hb_034661_020 0.0519630734 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
3 Hb_001627_030 0.065387122 - - hypothetical protein JCGZ_11752 [Jatropha curcas]
4 Hb_000111_020 0.0816166399 - - hypothetical protein SORBIDRAFT_04g003755 [Sorghum bicolor]
5 Hb_147793_010 0.0880713141 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
6 Hb_096292_010 0.1049885148 - - hypothetical protein JCGZ_25718 [Jatropha curcas]
7 Hb_185736_010 0.1323771055 - - -
8 Hb_007273_010 0.1428565965 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
9 Hb_187134_010 0.1502547839 - - -
10 Hb_002391_330 0.1771718283 - - conserved hypothetical protein [Ricinus communis]
11 Hb_041405_010 0.1903918487 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Glycine max]
12 Hb_023661_060 0.1952445275 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
13 Hb_000002_170 0.2003349546 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
14 Hb_000016_070 0.2065184553 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
15 Hb_000019_020 0.2065184553 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
16 Hb_000019_160 0.2065184553 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
17 Hb_000029_230 0.2065184553 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
18 Hb_000032_170 0.2065184553 - - -
19 Hb_000042_170 0.2065184553 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
20 Hb_000050_210 0.2065184553 - - PREDICTED: uncharacterized protein LOC105797515 [Gossypium raimondii]

Gene co-expression network

sample Hb_000002_200 Hb_000002_200 Hb_034661_020 Hb_034661_020 Hb_000002_200--Hb_034661_020 Hb_001627_030 Hb_001627_030 Hb_000002_200--Hb_001627_030 Hb_000111_020 Hb_000111_020 Hb_000002_200--Hb_000111_020 Hb_147793_010 Hb_147793_010 Hb_000002_200--Hb_147793_010 Hb_096292_010 Hb_096292_010 Hb_000002_200--Hb_096292_010 Hb_185736_010 Hb_185736_010 Hb_000002_200--Hb_185736_010 Hb_034661_020--Hb_001627_030 Hb_034661_020--Hb_147793_010 Hb_034661_020--Hb_000111_020 Hb_034661_020--Hb_096292_010 Hb_034661_020--Hb_185736_010 Hb_001627_030--Hb_000111_020 Hb_001627_030--Hb_185736_010 Hb_007273_010 Hb_007273_010 Hb_001627_030--Hb_007273_010 Hb_001627_030--Hb_096292_010 Hb_000111_020--Hb_185736_010 Hb_000111_020--Hb_007273_010 Hb_187134_010 Hb_187134_010 Hb_000111_020--Hb_187134_010 Hb_000111_020--Hb_096292_010 Hb_147793_010--Hb_001627_030 Hb_147793_010--Hb_000111_020 Hb_147793_010--Hb_096292_010 Hb_147793_010--Hb_185736_010 Hb_096292_010--Hb_185736_010 Hb_096292_010--Hb_007273_010 Hb_096292_010--Hb_187134_010 Hb_185736_010--Hb_007273_010 Hb_185736_010--Hb_187134_010 Hb_011016_040 Hb_011016_040 Hb_185736_010--Hb_011016_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.194603 115.557 0.491152 9.73572 0

CAGE analysis