Hb_007273_010

Information

Type -
Description -
Location Contig7273: 4657-5004
Sequence    

Annotation

kegg
ID tcc:TCM_022507
description 60S acidic ribosomal protein P2-4
nr
ID XP_011044769.1
description PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
swissprot
ID P41099
description 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1
trembl
ID I3T179
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein p2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007273_010 0.0 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
2 Hb_187134_010 0.0080897919 - - -
3 Hb_185736_010 0.011550579 - - -
4 Hb_000111_020 0.0710975343 - - hypothetical protein SORBIDRAFT_04g003755 [Sorghum bicolor]
5 Hb_096292_010 0.0929334849 - - hypothetical protein JCGZ_25718 [Jatropha curcas]
6 Hb_001627_030 0.0944174215 - - hypothetical protein JCGZ_11752 [Jatropha curcas]
7 Hb_011016_040 0.1041544297 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_000143_040 0.1041788867 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_000258_190 0.104743733 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
10 Hb_003388_090 0.1052258367 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
11 Hb_000265_180 0.1060921391 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
12 Hb_004881_110 0.1078963441 - - -
13 Hb_001369_330 0.1079691132 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010120_010 0.1086270616 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
15 Hb_010267_010 0.1095103993 - - -
16 Hb_035492_010 0.1303947064 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
17 Hb_000635_120 0.1339203956 - - -
18 Hb_001999_110 0.1340354917 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
19 Hb_011457_060 0.1350424411 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
20 Hb_012368_060 0.1354532595 - - -

Gene co-expression network

sample Hb_007273_010 Hb_007273_010 Hb_187134_010 Hb_187134_010 Hb_007273_010--Hb_187134_010 Hb_185736_010 Hb_185736_010 Hb_007273_010--Hb_185736_010 Hb_000111_020 Hb_000111_020 Hb_007273_010--Hb_000111_020 Hb_096292_010 Hb_096292_010 Hb_007273_010--Hb_096292_010 Hb_001627_030 Hb_001627_030 Hb_007273_010--Hb_001627_030 Hb_011016_040 Hb_011016_040 Hb_007273_010--Hb_011016_040 Hb_187134_010--Hb_185736_010 Hb_187134_010--Hb_000111_020 Hb_187134_010--Hb_011016_040 Hb_000143_040 Hb_000143_040 Hb_187134_010--Hb_000143_040 Hb_000258_190 Hb_000258_190 Hb_187134_010--Hb_000258_190 Hb_185736_010--Hb_000111_020 Hb_185736_010--Hb_001627_030 Hb_185736_010--Hb_096292_010 Hb_185736_010--Hb_011016_040 Hb_000111_020--Hb_001627_030 Hb_000002_200 Hb_000002_200 Hb_000111_020--Hb_000002_200 Hb_000111_020--Hb_096292_010 Hb_096292_010--Hb_187134_010 Hb_096292_010--Hb_001627_030 Hb_096292_010--Hb_000002_200 Hb_001627_030--Hb_000002_200 Hb_034661_020 Hb_034661_020 Hb_001627_030--Hb_034661_020 Hb_011016_040--Hb_000143_040 Hb_011016_040--Hb_000258_190 Hb_003388_090 Hb_003388_090 Hb_011016_040--Hb_003388_090 Hb_000265_180 Hb_000265_180 Hb_011016_040--Hb_000265_180 Hb_004881_110 Hb_004881_110 Hb_011016_040--Hb_004881_110 Hb_001369_330 Hb_001369_330 Hb_011016_040--Hb_001369_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.416031 0 0.0924297 0

CAGE analysis