Hb_011016_040

Information

Type -
Description -
Location Contig11016: 20195-24147
Sequence    

Annotation

kegg
ID rcu:RCOM_1008260
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002533526.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q9SIQ7
description Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana GN=CPK24 PE=2 SV=1
trembl
ID B9T5K7
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1008260 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calcium-dependent protein kinase 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011016_040 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_000143_040 2.46118e-05 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
3 Hb_000258_190 0.0005930499 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_003388_090 0.0010782454 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
5 Hb_000265_180 0.0019501636 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
6 Hb_004881_110 0.0037663112 - - -
7 Hb_001369_330 0.003839569 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010120_010 0.0045019601 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_010267_010 0.0053913316 - - -
10 Hb_035492_010 0.0264406395 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
11 Hb_000635_120 0.0299982661 - - -
12 Hb_001999_110 0.030114424 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
13 Hb_011457_060 0.0311307141 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
14 Hb_012368_060 0.0315453699 - - -
15 Hb_187134_010 0.0961191145 - - -
16 Hb_007273_010 0.1041544297 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
17 Hb_185736_010 0.1156083952 - - -
18 Hb_083103_030 0.1389402998 - - putative retrotransposon protein [Malus domestica]
19 Hb_103832_030 0.1427508819 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
20 Hb_172503_010 0.1435423767 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]

Gene co-expression network

sample Hb_011016_040 Hb_011016_040 Hb_000143_040 Hb_000143_040 Hb_011016_040--Hb_000143_040 Hb_000258_190 Hb_000258_190 Hb_011016_040--Hb_000258_190 Hb_003388_090 Hb_003388_090 Hb_011016_040--Hb_003388_090 Hb_000265_180 Hb_000265_180 Hb_011016_040--Hb_000265_180 Hb_004881_110 Hb_004881_110 Hb_011016_040--Hb_004881_110 Hb_001369_330 Hb_001369_330 Hb_011016_040--Hb_001369_330 Hb_000143_040--Hb_000258_190 Hb_000143_040--Hb_003388_090 Hb_000143_040--Hb_000265_180 Hb_000143_040--Hb_004881_110 Hb_000143_040--Hb_001369_330 Hb_000258_190--Hb_003388_090 Hb_000258_190--Hb_000265_180 Hb_000258_190--Hb_004881_110 Hb_000258_190--Hb_001369_330 Hb_003388_090--Hb_000265_180 Hb_003388_090--Hb_004881_110 Hb_003388_090--Hb_001369_330 Hb_000265_180--Hb_004881_110 Hb_000265_180--Hb_001369_330 Hb_004881_110--Hb_001369_330 Hb_010120_010 Hb_010120_010 Hb_004881_110--Hb_010120_010 Hb_010267_010 Hb_010267_010 Hb_004881_110--Hb_010267_010 Hb_001369_330--Hb_010120_010 Hb_001369_330--Hb_010267_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0712466 0 0.0284275 0

CAGE analysis