Hb_000258_190

Information

Type transcription factor
Description TF Family: NAC
Location Contig258: 156715-158204
Sequence    

Annotation

kegg
ID rcu:RCOM_0836330
description NAC domain-containing protein, putative
nr
ID XP_002522427.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZVH0
description Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1
trembl
ID B9S8V8
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0836330 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein fez-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_190 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_003388_090 0.0004851957 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
3 Hb_000143_040 0.0005684381 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
4 Hb_011016_040 0.0005930499 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_000265_180 0.0013571145 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
6 Hb_004881_110 0.0031732649 - - -
7 Hb_001369_330 0.0032465228 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010120_010 0.0039089155 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_010267_010 0.0047982893 - - -
10 Hb_035492_010 0.0258477869 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
11 Hb_000635_120 0.0294054698 - - -
12 Hb_001999_110 0.0295216297 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
13 Hb_011457_060 0.0305379372 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
14 Hb_012368_060 0.0309526002 - - -
15 Hb_187134_010 0.0967090086 - - -
16 Hb_007273_010 0.104743733 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
17 Hb_185736_010 0.1161967546 - - -
18 Hb_083103_030 0.1383521539 - - putative retrotransposon protein [Malus domestica]
19 Hb_103832_030 0.1421629898 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
20 Hb_172503_010 0.1429545381 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_190 Hb_000258_190 Hb_003388_090 Hb_003388_090 Hb_000258_190--Hb_003388_090 Hb_000143_040 Hb_000143_040 Hb_000258_190--Hb_000143_040 Hb_011016_040 Hb_011016_040 Hb_000258_190--Hb_011016_040 Hb_000265_180 Hb_000265_180 Hb_000258_190--Hb_000265_180 Hb_004881_110 Hb_004881_110 Hb_000258_190--Hb_004881_110 Hb_001369_330 Hb_001369_330 Hb_000258_190--Hb_001369_330 Hb_003388_090--Hb_000265_180 Hb_003388_090--Hb_000143_040 Hb_003388_090--Hb_011016_040 Hb_003388_090--Hb_004881_110 Hb_003388_090--Hb_001369_330 Hb_000143_040--Hb_011016_040 Hb_000143_040--Hb_000265_180 Hb_000143_040--Hb_004881_110 Hb_000143_040--Hb_001369_330 Hb_011016_040--Hb_000265_180 Hb_011016_040--Hb_004881_110 Hb_011016_040--Hb_001369_330 Hb_000265_180--Hb_004881_110 Hb_000265_180--Hb_001369_330 Hb_004881_110--Hb_001369_330 Hb_010120_010 Hb_010120_010 Hb_004881_110--Hb_010120_010 Hb_010267_010 Hb_010267_010 Hb_004881_110--Hb_010267_010 Hb_001369_330--Hb_010120_010 Hb_001369_330--Hb_010267_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0301129 0 0.0120523 0

CAGE analysis