Hb_003732_040

Information

Type -
Description -
Location Contig3732: 56068-57045
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13770g
description POPTRDRAFT_808220; putative esterase family protein
nr
ID XP_002322442.1
description putative esterase family protein [Populus trichocarpa]
swissprot
ID Q0ZPV7
description Carboxylesterase 1 OS=Actinidia eriantha GN=CXE1 PE=1 SV=1
trembl
ID B9ID20
description Putative esterase family protein OS=Populus trichocarpa GN=POPTR_0015s13770g PE=4 SV=1
Gene Ontology
ID GO:0016787
description carboxylesterase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38164: 56537-56896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003732_040 0.0 - - putative esterase family protein [Populus trichocarpa]
2 Hb_014497_080 0.150871198 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
3 Hb_000062_300 0.1533082028 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
4 Hb_006277_070 0.1697539614 - - conserved hypothetical protein [Ricinus communis]
5 Hb_042871_010 0.2016418808 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
6 Hb_033834_050 0.2118736887 - - conserved hypothetical protein [Ricinus communis]
7 Hb_147793_010 0.219014712 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
8 Hb_000002_170 0.2199160991 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
9 Hb_012573_010 0.2263436407 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
10 Hb_034661_020 0.24226105 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
11 Hb_000012_070 0.2458380882 - - cytochrome P450, putative [Ricinus communis]
12 Hb_002391_330 0.2477775739 - - conserved hypothetical protein [Ricinus communis]
13 Hb_051067_010 0.2502756692 - - -
14 Hb_096292_010 0.2503969705 - - hypothetical protein JCGZ_25718 [Jatropha curcas]
15 Hb_002890_070 0.2504600758 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
16 Hb_002784_100 0.2524950173 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
17 Hb_000002_200 0.2546828194 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
18 Hb_041405_010 0.2555001154 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Glycine max]
19 Hb_006469_120 0.2584867995 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
20 Hb_000111_020 0.2680236985 - - hypothetical protein SORBIDRAFT_04g003755 [Sorghum bicolor]

Gene co-expression network

sample Hb_003732_040 Hb_003732_040 Hb_014497_080 Hb_014497_080 Hb_003732_040--Hb_014497_080 Hb_000062_300 Hb_000062_300 Hb_003732_040--Hb_000062_300 Hb_006277_070 Hb_006277_070 Hb_003732_040--Hb_006277_070 Hb_042871_010 Hb_042871_010 Hb_003732_040--Hb_042871_010 Hb_033834_050 Hb_033834_050 Hb_003732_040--Hb_033834_050 Hb_147793_010 Hb_147793_010 Hb_003732_040--Hb_147793_010 Hb_014497_080--Hb_000062_300 Hb_014497_080--Hb_033834_050 Hb_014497_080--Hb_042871_010 Hb_003398_020 Hb_003398_020 Hb_014497_080--Hb_003398_020 Hb_086692_020 Hb_086692_020 Hb_014497_080--Hb_086692_020 Hb_000062_300--Hb_042871_010 Hb_000012_070 Hb_000012_070 Hb_000062_300--Hb_000012_070 Hb_000062_300--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000062_300--Hb_003891_080 Hb_000002_170 Hb_000002_170 Hb_006277_070--Hb_000002_170 Hb_012573_010 Hb_012573_010 Hb_006277_070--Hb_012573_010 Hb_051067_010 Hb_051067_010 Hb_006277_070--Hb_051067_010 Hb_002391_330 Hb_002391_330 Hb_006277_070--Hb_002391_330 Hb_015057_030 Hb_015057_030 Hb_006277_070--Hb_015057_030 Hb_000656_410 Hb_000656_410 Hb_042871_010--Hb_000656_410 Hb_042871_010--Hb_033834_050 Hb_011609_110 Hb_011609_110 Hb_042871_010--Hb_011609_110 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_002784_100 Hb_002784_100 Hb_033834_050--Hb_002784_100 Hb_033834_050--Hb_011609_110 Hb_028271_020 Hb_028271_020 Hb_033834_050--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_033834_050--Hb_001449_100 Hb_000002_200 Hb_000002_200 Hb_147793_010--Hb_000002_200 Hb_001627_030 Hb_001627_030 Hb_147793_010--Hb_001627_030 Hb_034661_020 Hb_034661_020 Hb_147793_010--Hb_034661_020 Hb_000111_020 Hb_000111_020 Hb_147793_010--Hb_000111_020 Hb_096292_010 Hb_096292_010 Hb_147793_010--Hb_096292_010 Hb_185736_010 Hb_185736_010 Hb_147793_010--Hb_185736_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.182633 0.380861 0.193576 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.326416 8.85653 0.23534 1.15445 0.261475

CAGE analysis