Hb_002784_100

Information

Type -
Description -
Location Contig2784: 106170-106586
Sequence    

Annotation

kegg
ID rcu:RCOM_1451990
description protein with unknown function
nr
ID XP_012068696.1
description PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
swissprot
ID Q9LDH1
description Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1
trembl
ID A0A067L8W8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_100 0.0 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
2 Hb_033834_050 0.1492894331 - - conserved hypothetical protein [Ricinus communis]
3 Hb_028271_020 0.1516571989 - - acyl-CoA oxidase, putative [Ricinus communis]
4 Hb_001449_100 0.1678454458 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
5 Hb_000656_410 0.181086142 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
6 Hb_011609_110 0.1938914005 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
7 Hb_042871_010 0.201014002 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
8 Hb_002908_070 0.2120360142 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
9 Hb_000622_080 0.2124087409 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
10 Hb_011628_020 0.2173805833 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004679_060 0.2175921945 - - conserved hypothetical protein [Ricinus communis]
12 Hb_014497_080 0.2208487492 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
13 Hb_012053_010 0.2210541971 - - srpk, putative [Ricinus communis]
14 Hb_000062_300 0.2218530673 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
15 Hb_003777_360 0.2218796744 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
16 Hb_002217_460 0.2304177918 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
17 Hb_091889_010 0.231107005 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
18 Hb_001638_070 0.2329456727 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
19 Hb_001164_030 0.2363466927 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
20 Hb_086692_020 0.2377655868 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002784_100 Hb_002784_100 Hb_033834_050 Hb_033834_050 Hb_002784_100--Hb_033834_050 Hb_028271_020 Hb_028271_020 Hb_002784_100--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_002784_100--Hb_001449_100 Hb_000656_410 Hb_000656_410 Hb_002784_100--Hb_000656_410 Hb_011609_110 Hb_011609_110 Hb_002784_100--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_002784_100--Hb_042871_010 Hb_033834_050--Hb_011609_110 Hb_033834_050--Hb_042871_010 Hb_033834_050--Hb_028271_020 Hb_033834_050--Hb_001449_100 Hb_000062_300 Hb_000062_300 Hb_033834_050--Hb_000062_300 Hb_028271_020--Hb_001449_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_028271_020--Hb_003540_200 Hb_000997_190 Hb_000997_190 Hb_028271_020--Hb_000997_190 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_001449_100--Hb_011609_110 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_000656_410--Hb_042871_010 Hb_000656_410--Hb_011609_110 Hb_000656_410--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000656_410--Hb_003891_080 Hb_005321_010 Hb_005321_010 Hb_000656_410--Hb_005321_010 Hb_011609_110--Hb_042871_010 Hb_011609_110--Hb_028271_020 Hb_042871_010--Hb_000062_300 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_014497_080 Hb_014497_080 Hb_042871_010--Hb_014497_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31158 8.63599 5.41657 4.74884 3.39912 0.070727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.97362 66.7004 9.84795 8.67598 3.60878

CAGE analysis