Hb_007017_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig7017: 16328-18438
Sequence    

Annotation

kegg
ID rcu:RCOM_0699450
description transcription factor, putative
nr
ID XP_012091999.1
description PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067JMP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21741 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54879: 16405-18286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_010 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
2 Hb_002235_080 0.1412839102 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
3 Hb_003327_050 0.1451163873 - - surfeit locus protein, putative [Ricinus communis]
4 Hb_000028_100 0.1452189494 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
5 Hb_000487_230 0.1558815946 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
6 Hb_000099_070 0.1581967014 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
7 Hb_183612_060 0.1622063984 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
8 Hb_000694_060 0.1630126737 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
9 Hb_003929_150 0.1640231556 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
10 Hb_000441_110 0.1691326178 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
11 Hb_002631_180 0.1711863561 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
12 Hb_002713_010 0.1719307898 - - multidrug resistance protein 1, 2, putative [Ricinus communis]
13 Hb_003020_150 0.1737499333 - - tropinone reductase, putative [Ricinus communis]
14 Hb_000788_010 0.1745431614 - - 40S ribosomal protein S16A [Hevea brasiliensis]
15 Hb_002232_060 0.1762489044 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
16 Hb_001449_100 0.1779068873 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
17 Hb_000739_300 0.1779469891 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
18 Hb_001369_170 0.1816923769 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
19 Hb_003638_070 0.1838151871 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
20 Hb_000866_240 0.1841986861 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007017_010 Hb_007017_010 Hb_002235_080 Hb_002235_080 Hb_007017_010--Hb_002235_080 Hb_003327_050 Hb_003327_050 Hb_007017_010--Hb_003327_050 Hb_000028_100 Hb_000028_100 Hb_007017_010--Hb_000028_100 Hb_000487_230 Hb_000487_230 Hb_007017_010--Hb_000487_230 Hb_000099_070 Hb_000099_070 Hb_007017_010--Hb_000099_070 Hb_183612_060 Hb_183612_060 Hb_007017_010--Hb_183612_060 Hb_003929_150 Hb_003929_150 Hb_002235_080--Hb_003929_150 Hb_007245_080 Hb_007245_080 Hb_002235_080--Hb_007245_080 Hb_006478_160 Hb_006478_160 Hb_002235_080--Hb_006478_160 Hb_000093_110 Hb_000093_110 Hb_002235_080--Hb_000093_110 Hb_000788_010 Hb_000788_010 Hb_002235_080--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_002235_080--Hb_008921_020 Hb_086639_090 Hb_086639_090 Hb_003327_050--Hb_086639_090 Hb_000441_110 Hb_000441_110 Hb_003327_050--Hb_000441_110 Hb_003327_050--Hb_000028_100 Hb_001369_170 Hb_001369_170 Hb_003327_050--Hb_001369_170 Hb_031718_010 Hb_031718_010 Hb_003327_050--Hb_031718_010 Hb_004453_020 Hb_004453_020 Hb_003327_050--Hb_004453_020 Hb_000028_100--Hb_003929_150 Hb_000155_160 Hb_000155_160 Hb_000028_100--Hb_000155_160 Hb_000028_100--Hb_002235_080 Hb_003494_050 Hb_003494_050 Hb_000028_100--Hb_003494_050 Hb_000419_020 Hb_000419_020 Hb_000028_100--Hb_000419_020 Hb_000028_100--Hb_000441_110 Hb_000487_230--Hb_000441_110 Hb_002231_030 Hb_002231_030 Hb_000487_230--Hb_002231_030 Hb_000086_230 Hb_000086_230 Hb_000487_230--Hb_000086_230 Hb_000699_090 Hb_000699_090 Hb_000487_230--Hb_000699_090 Hb_010812_040 Hb_010812_040 Hb_000487_230--Hb_010812_040 Hb_003992_240 Hb_003992_240 Hb_000487_230--Hb_003992_240 Hb_000116_040 Hb_000116_040 Hb_000099_070--Hb_000116_040 Hb_008772_010 Hb_008772_010 Hb_000099_070--Hb_008772_010 Hb_006006_050 Hb_006006_050 Hb_000099_070--Hb_006006_050 Hb_000099_070--Hb_002235_080 Hb_011236_010 Hb_011236_010 Hb_000099_070--Hb_011236_010 Hb_003020_150 Hb_003020_150 Hb_183612_060--Hb_003020_150 Hb_002260_010 Hb_002260_010 Hb_183612_060--Hb_002260_010 Hb_006256_030 Hb_006256_030 Hb_183612_060--Hb_006256_030 Hb_002232_060 Hb_002232_060 Hb_183612_060--Hb_002232_060 Hb_013399_050 Hb_013399_050 Hb_183612_060--Hb_013399_050 Hb_000997_190 Hb_000997_190 Hb_183612_060--Hb_000997_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.3021 19.0651 7.5329 8.56717 3.44226 6.65617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8928 57.9678 9.76061 22.2497 12.2902

CAGE analysis