Hb_031718_010

Information

Type -
Description -
Location Contig31718: 24429-28483
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33434: 7282-28478
cDNA
(Sanger)
(ID:Location)		 025_K04.ab1: 7282-28478

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031718_010 0.0 - - -
2 Hb_011644_030 0.129776672 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
3 Hb_004567_120 0.1389482051 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
4 Hb_003327_050 0.1398094781 - - surfeit locus protein, putative [Ricinus communis]
5 Hb_003623_050 0.14125133 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001484_010 0.1422627435 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
7 Hb_026048_070 0.1438488565 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
8 Hb_002719_080 0.1456648761 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
9 Hb_086639_090 0.1470236358 - - 60S ribosomal protein L7a, putative [Ricinus communis]
10 Hb_004216_050 0.1477303719 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
11 Hb_027380_180 0.1505576128 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
12 Hb_000136_170 0.1524080279 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
13 Hb_000072_180 0.1525387254 - - PREDICTED: EVI5-like protein [Jatropha curcas]
14 Hb_027625_010 0.1530886976 - - PREDICTED: protein sym-1-like [Jatropha curcas]
15 Hb_006420_100 0.1532360666 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
16 Hb_000134_070 0.1541078554 - - 60S ribosomal protein L6, putative [Ricinus communis]
17 Hb_010068_020 0.1543475195 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
18 Hb_000302_280 0.1560504829 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
19 Hb_116898_010 0.1571243332 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
20 Hb_005474_060 0.1572566342 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_031718_010 Hb_031718_010 Hb_011644_030 Hb_011644_030 Hb_031718_010--Hb_011644_030 Hb_004567_120 Hb_004567_120 Hb_031718_010--Hb_004567_120 Hb_003327_050 Hb_003327_050 Hb_031718_010--Hb_003327_050 Hb_003623_050 Hb_003623_050 Hb_031718_010--Hb_003623_050 Hb_001484_010 Hb_001484_010 Hb_031718_010--Hb_001484_010 Hb_026048_070 Hb_026048_070 Hb_031718_010--Hb_026048_070 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_011644_030--Hb_004567_120 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_006478_150 Hb_006478_150 Hb_004567_120--Hb_006478_150 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_004567_120--Hb_000136_170 Hb_086639_090 Hb_086639_090 Hb_003327_050--Hb_086639_090 Hb_000441_110 Hb_000441_110 Hb_003327_050--Hb_000441_110 Hb_000028_100 Hb_000028_100 Hb_003327_050--Hb_000028_100 Hb_001369_170 Hb_001369_170 Hb_003327_050--Hb_001369_170 Hb_004453_020 Hb_004453_020 Hb_003327_050--Hb_004453_020 Hb_003623_050--Hb_000136_170 Hb_005357_130 Hb_005357_130 Hb_003623_050--Hb_005357_130 Hb_003623_050--Hb_026048_070 Hb_000086_550 Hb_000086_550 Hb_003623_050--Hb_000086_550 Hb_003623_050--Hb_011644_030 Hb_001505_020 Hb_001505_020 Hb_003623_050--Hb_001505_020 Hb_000072_180 Hb_000072_180 Hb_001484_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_001484_010--Hb_027654_050 Hb_004672_010 Hb_004672_010 Hb_001484_010--Hb_004672_010 Hb_006420_100 Hb_006420_100 Hb_001484_010--Hb_006420_100 Hb_000016_080 Hb_000016_080 Hb_001484_010--Hb_000016_080 Hb_000417_260 Hb_000417_260 Hb_001484_010--Hb_000417_260 Hb_001016_090 Hb_001016_090 Hb_026048_070--Hb_001016_090 Hb_003053_030 Hb_003053_030 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.604833 0.160673 0.373973 0.419701 0.215893 1.32214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01527 2.59382 1.30055 1.27368 0.917042

CAGE analysis