Hb_001484_010

Information

Type -
Description -
Location Contig1484: 35465-45612
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07440g
description POPTRDRAFT_558510; hypothetical protein
nr
ID XP_002306300.1
description hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
swissprot
ID Q9LX90
description Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1
trembl
ID B9H4R7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07440g PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12191: 35464-45586 , PASA_asmbl_12192: 35511-42561 , PASA_asmbl_12193: 42754-43306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001484_010 0.0 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
2 Hb_000072_180 0.098203299 - - PREDICTED: EVI5-like protein [Jatropha curcas]
3 Hb_027654_050 0.0989200255 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
4 Hb_004672_010 0.0989748725 - - ecotropic viral integration site, putative [Ricinus communis]
5 Hb_006420_100 0.0994424572 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
6 Hb_000016_080 0.10671481 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
7 Hb_000417_260 0.1072796995 - - protein with unknown function [Ricinus communis]
8 Hb_012490_050 0.1074982466 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
9 Hb_000817_030 0.1082884082 - - mak, putative [Ricinus communis]
10 Hb_005463_140 0.1089565459 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
11 Hb_000398_040 0.1106951515 - - Auxin response factor, putative [Ricinus communis]
12 Hb_004216_050 0.1107097266 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
13 Hb_004567_120 0.1123679672 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
14 Hb_000302_280 0.1129037067 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
15 Hb_011644_030 0.1143622437 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
16 Hb_000673_020 0.1147759804 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
17 Hb_002111_040 0.1148139688 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
18 Hb_026048_070 0.1159771294 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
19 Hb_001512_080 0.1160640208 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
20 Hb_001775_110 0.1171848378 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]

Gene co-expression network

sample Hb_001484_010 Hb_001484_010 Hb_000072_180 Hb_000072_180 Hb_001484_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_001484_010--Hb_027654_050 Hb_004672_010 Hb_004672_010 Hb_001484_010--Hb_004672_010 Hb_006420_100 Hb_006420_100 Hb_001484_010--Hb_006420_100 Hb_000016_080 Hb_000016_080 Hb_001484_010--Hb_000016_080 Hb_000417_260 Hb_000417_260 Hb_001484_010--Hb_000417_260 Hb_000072_180--Hb_006420_100 Hb_000046_350 Hb_000046_350 Hb_000072_180--Hb_000046_350 Hb_000072_180--Hb_004672_010 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_027625_010 Hb_027625_010 Hb_000072_180--Hb_027625_010 Hb_148113_010 Hb_148113_010 Hb_000072_180--Hb_148113_010 Hb_001776_160 Hb_001776_160 Hb_027654_050--Hb_001776_160 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_001512_080 Hb_001512_080 Hb_027654_050--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_004672_010--Hb_000417_260 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_004672_010--Hb_027654_050 Hb_002111_040 Hb_002111_040 Hb_006420_100--Hb_002111_040 Hb_006420_100--Hb_000046_350 Hb_002183_060 Hb_002183_060 Hb_006420_100--Hb_002183_060 Hb_001545_170 Hb_001545_170 Hb_006420_100--Hb_001545_170 Hb_000023_090 Hb_000023_090 Hb_006420_100--Hb_000023_090 Hb_000789_230 Hb_000789_230 Hb_000016_080--Hb_000789_230 Hb_000016_080--Hb_000254_050 Hb_007065_010 Hb_007065_010 Hb_000016_080--Hb_007065_010 Hb_000735_090 Hb_000735_090 Hb_000016_080--Hb_000735_090 Hb_001728_060 Hb_001728_060 Hb_000016_080--Hb_001728_060 Hb_002613_020 Hb_002613_020 Hb_000016_080--Hb_002613_020 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.998 10.7126 30.5954 54.6809 31.9138 55.1829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.799 163.309 123.979 107.781 61.4336

CAGE analysis