Hb_000699_090

Information

Type -
Description -
Location Contig699: 72017-72541
Sequence    

Annotation

kegg
ID rcu:RCOM_0608620
description cyclophilin, putative (EC:5.2.1.8)
nr
ID XP_002521961.1
description cyclophilin, putative [Ricinus communis]
swissprot
ID Q38867
description Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=2 SV=2
trembl
ID B9S7J2
description Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_0608620 PE=3 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase cyp19-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54675: 71645-73964 , PASA_asmbl_54676: 73050-73308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_090 0.0 - - cyclophilin, putative [Ricinus communis]
2 Hb_011236_010 0.08979979 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
3 Hb_000906_040 0.0902704952 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
4 Hb_000577_090 0.0951982533 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
5 Hb_000265_050 0.0958283929 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
6 Hb_004223_040 0.0995468399 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
7 Hb_000574_160 0.1046835968 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
8 Hb_003038_190 0.1049628565 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
9 Hb_012251_010 0.1073744103 - - -
10 Hb_000093_110 0.1094521031 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
11 Hb_004127_020 0.1110835208 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
12 Hb_008921_020 0.111229212 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_000840_180 0.111754967 - - protein BOLA2 [Jatropha curcas]
14 Hb_000331_700 0.1126126492 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
15 Hb_002235_080 0.1134629851 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
16 Hb_000203_020 0.1137386011 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
17 Hb_000441_110 0.1146194824 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
18 Hb_005063_050 0.1148052257 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
19 Hb_006478_160 0.1158211754 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
20 Hb_003994_250 0.1171675076 - - membrane associated ring finger 1,8, putative [Ricinus communis]

Gene co-expression network

sample Hb_000699_090 Hb_000699_090 Hb_011236_010 Hb_011236_010 Hb_000699_090--Hb_011236_010 Hb_000906_040 Hb_000906_040 Hb_000699_090--Hb_000906_040 Hb_000577_090 Hb_000577_090 Hb_000699_090--Hb_000577_090 Hb_000265_050 Hb_000265_050 Hb_000699_090--Hb_000265_050 Hb_004223_040 Hb_004223_040 Hb_000699_090--Hb_004223_040 Hb_000574_160 Hb_000574_160 Hb_000699_090--Hb_000574_160 Hb_011236_010--Hb_004223_040 Hb_003929_150 Hb_003929_150 Hb_011236_010--Hb_003929_150 Hb_006478_160 Hb_006478_160 Hb_011236_010--Hb_006478_160 Hb_001718_030 Hb_001718_030 Hb_011236_010--Hb_001718_030 Hb_000676_310 Hb_000676_310 Hb_011236_010--Hb_000676_310 Hb_000975_320 Hb_000975_320 Hb_000906_040--Hb_000975_320 Hb_000906_040--Hb_000574_160 Hb_002235_350 Hb_002235_350 Hb_000906_040--Hb_002235_350 Hb_001780_040 Hb_001780_040 Hb_000906_040--Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_000906_040--Hb_002768_030 Hb_012368_020 Hb_012368_020 Hb_000906_040--Hb_012368_020 Hb_000093_110 Hb_000093_110 Hb_000577_090--Hb_000093_110 Hb_002006_130 Hb_002006_130 Hb_000577_090--Hb_002006_130 Hb_000840_180 Hb_000840_180 Hb_000577_090--Hb_000840_180 Hb_000577_090--Hb_003929_150 Hb_000676_160 Hb_000676_160 Hb_000577_090--Hb_000676_160 Hb_002798_020 Hb_002798_020 Hb_000265_050--Hb_002798_020 Hb_004127_020 Hb_004127_020 Hb_000265_050--Hb_004127_020 Hb_005063_050 Hb_005063_050 Hb_000265_050--Hb_005063_050 Hb_000136_170 Hb_000136_170 Hb_000265_050--Hb_000136_170 Hb_003893_050 Hb_003893_050 Hb_000265_050--Hb_003893_050 Hb_004459_040 Hb_004459_040 Hb_000265_050--Hb_004459_040 Hb_008921_020 Hb_008921_020 Hb_004223_040--Hb_008921_020 Hb_004223_040--Hb_012368_020 Hb_007044_130 Hb_007044_130 Hb_004223_040--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_004223_040--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_004223_040--Hb_000062_650 Hb_000574_160--Hb_002235_350 Hb_002259_070 Hb_002259_070 Hb_000574_160--Hb_002259_070 Hb_019253_030 Hb_019253_030 Hb_000574_160--Hb_019253_030 Hb_000029_200 Hb_000029_200 Hb_000574_160--Hb_000029_200 Hb_000574_160--Hb_001780_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.2843 43.4258 34.5967 54.4405 33.5917 47.2399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.1883 230.744 61.5006 24.2821 52.0917

CAGE analysis