Hb_003929_150

Information

Type -
Description -
Location Contig3929: 84705-87513
Sequence    

Annotation

kegg
ID rcu:RCOM_1003610
description hypothetical protein
nr
ID XP_012084196.1
description PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
swissprot
ID O42877
description rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf2 PE=3 SV=1
trembl
ID A0A067K6V6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19085 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39356: 81978-84097 , PASA_asmbl_39357: 84739-87490 , PASA_asmbl_39358: 84739-87435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_150 0.0 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
2 Hb_002235_080 0.0752229213 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
3 Hb_011236_010 0.0894012892 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
4 Hb_006478_160 0.0920678691 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
5 Hb_000155_160 0.0955472343 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
6 Hb_007245_080 0.0968020052 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
7 Hb_001718_030 0.0993738529 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
8 Hb_000922_040 0.1002449822 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
9 Hb_003020_150 0.1037846018 - - tropinone reductase, putative [Ricinus communis]
10 Hb_006256_030 0.1046917057 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
11 Hb_005269_080 0.1068150301 - - protein with unknown function [Ricinus communis]
12 Hb_003494_050 0.1078580207 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
13 Hb_000377_120 0.1082637815 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_000788_010 0.108895119 - - 40S ribosomal protein S16A [Hevea brasiliensis]
15 Hb_009476_020 0.1090664449 - - tryptophan biosynthesis protein, putative [Ricinus communis]
16 Hb_002060_010 0.1092988226 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
17 Hb_000465_510 0.1100573679 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
18 Hb_000768_130 0.1105290247 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
19 Hb_000085_350 0.1109862864 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
20 Hb_091433_020 0.111589242 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003929_150 Hb_003929_150 Hb_002235_080 Hb_002235_080 Hb_003929_150--Hb_002235_080 Hb_011236_010 Hb_011236_010 Hb_003929_150--Hb_011236_010 Hb_006478_160 Hb_006478_160 Hb_003929_150--Hb_006478_160 Hb_000155_160 Hb_000155_160 Hb_003929_150--Hb_000155_160 Hb_007245_080 Hb_007245_080 Hb_003929_150--Hb_007245_080 Hb_001718_030 Hb_001718_030 Hb_003929_150--Hb_001718_030 Hb_002235_080--Hb_007245_080 Hb_002235_080--Hb_006478_160 Hb_000093_110 Hb_000093_110 Hb_002235_080--Hb_000093_110 Hb_000788_010 Hb_000788_010 Hb_002235_080--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_002235_080--Hb_008921_020 Hb_004223_040 Hb_004223_040 Hb_011236_010--Hb_004223_040 Hb_000699_090 Hb_000699_090 Hb_011236_010--Hb_000699_090 Hb_011236_010--Hb_006478_160 Hb_011236_010--Hb_001718_030 Hb_000676_310 Hb_000676_310 Hb_011236_010--Hb_000676_310 Hb_000567_410 Hb_000567_410 Hb_006478_160--Hb_000567_410 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_006478_160--Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_006478_160--Hb_000735_040 Hb_006478_160--Hb_000788_010 Hb_006478_160--Hb_008921_020 Hb_000419_020 Hb_000419_020 Hb_000155_160--Hb_000419_020 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_007747_050 Hb_007747_050 Hb_000155_160--Hb_007747_050 Hb_000847_060 Hb_000847_060 Hb_000155_160--Hb_000847_060 Hb_001863_430 Hb_001863_430 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_009476_020 Hb_009476_020 Hb_007245_080--Hb_009476_020 Hb_001789_050 Hb_001789_050 Hb_007245_080--Hb_001789_050 Hb_000576_060 Hb_000576_060 Hb_007245_080--Hb_000576_060 Hb_007245_080--Hb_000735_040 Hb_007120_090 Hb_007120_090 Hb_007245_080--Hb_007120_090 Hb_001188_030 Hb_001188_030 Hb_001718_030--Hb_001188_030 Hb_006355_040 Hb_006355_040 Hb_001718_030--Hb_006355_040 Hb_002060_010 Hb_002060_010 Hb_001718_030--Hb_002060_010 Hb_001431_080 Hb_001431_080 Hb_001718_030--Hb_001431_080 Hb_000676_390 Hb_000676_390 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.02165 13.4078 14.7577 20.6911 5.59931 9.18881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6736 62.3771 17.8603 15.3238 12.0269

CAGE analysis