Hb_002231_030

Information

Type -
Description -
Location Contig2231: 27619-30893
Sequence    

Annotation

kegg
ID rcu:RCOM_1674400
description protein-tyrosine kinase, putative (EC:2.7.11.25)
nr
ID XP_012091613.1
description PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067JN83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21450 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23092: 27749-31249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002231_030 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
2 Hb_007044_060 0.1133379159 - - ATP binding protein, putative [Ricinus communis]
3 Hb_003044_090 0.1265878264 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
4 Hb_000997_190 0.1277316007 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
5 Hb_000906_040 0.1281152028 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
6 Hb_000487_230 0.1295576061 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
7 Hb_000699_090 0.1303794139 - - cyclophilin, putative [Ricinus communis]
8 Hb_006615_080 0.1304893627 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
9 Hb_000331_700 0.1313159543 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
10 Hb_011236_010 0.1342747091 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
11 Hb_006478_160 0.1349294765 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
12 Hb_000567_410 0.1407210555 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
13 Hb_003994_250 0.1435600019 - - membrane associated ring finger 1,8, putative [Ricinus communis]
14 Hb_003038_190 0.1447490463 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
15 Hb_000424_200 0.1457881466 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
16 Hb_006006_050 0.1470136467 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
17 Hb_001287_030 0.1480447105 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
18 Hb_000975_320 0.1484888009 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
19 Hb_001172_120 0.1501239107 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
20 Hb_008772_010 0.1511504796 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002231_030 Hb_002231_030 Hb_007044_060 Hb_007044_060 Hb_002231_030--Hb_007044_060 Hb_003044_090 Hb_003044_090 Hb_002231_030--Hb_003044_090 Hb_000997_190 Hb_000997_190 Hb_002231_030--Hb_000997_190 Hb_000906_040 Hb_000906_040 Hb_002231_030--Hb_000906_040 Hb_000487_230 Hb_000487_230 Hb_002231_030--Hb_000487_230 Hb_000699_090 Hb_000699_090 Hb_002231_030--Hb_000699_090 Hb_001269_170 Hb_001269_170 Hb_007044_060--Hb_001269_170 Hb_034406_020 Hb_034406_020 Hb_007044_060--Hb_034406_020 Hb_002397_070 Hb_002397_070 Hb_007044_060--Hb_002397_070 Hb_000072_080 Hb_000072_080 Hb_007044_060--Hb_000072_080 Hb_001287_030 Hb_001287_030 Hb_007044_060--Hb_001287_030 Hb_000331_700 Hb_000331_700 Hb_003044_090--Hb_000331_700 Hb_002811_080 Hb_002811_080 Hb_003044_090--Hb_002811_080 Hb_000975_320 Hb_000975_320 Hb_003044_090--Hb_000975_320 Hb_011311_010 Hb_011311_010 Hb_003044_090--Hb_011311_010 Hb_005511_160 Hb_005511_160 Hb_003044_090--Hb_005511_160 Hb_001565_080 Hb_001565_080 Hb_003044_090--Hb_001565_080 Hb_001172_120 Hb_001172_120 Hb_000997_190--Hb_001172_120 Hb_006006_050 Hb_006006_050 Hb_000997_190--Hb_006006_050 Hb_001235_110 Hb_001235_110 Hb_000997_190--Hb_001235_110 Hb_006478_160 Hb_006478_160 Hb_000997_190--Hb_006478_160 Hb_000567_410 Hb_000567_410 Hb_000997_190--Hb_000567_410 Hb_000906_040--Hb_000975_320 Hb_000574_160 Hb_000574_160 Hb_000906_040--Hb_000574_160 Hb_002235_350 Hb_002235_350 Hb_000906_040--Hb_002235_350 Hb_001780_040 Hb_001780_040 Hb_000906_040--Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_000906_040--Hb_002768_030 Hb_012368_020 Hb_012368_020 Hb_000906_040--Hb_012368_020 Hb_000441_110 Hb_000441_110 Hb_000487_230--Hb_000441_110 Hb_000086_230 Hb_000086_230 Hb_000487_230--Hb_000086_230 Hb_000487_230--Hb_000699_090 Hb_010812_040 Hb_010812_040 Hb_000487_230--Hb_010812_040 Hb_003992_240 Hb_003992_240 Hb_000487_230--Hb_003992_240 Hb_011236_010 Hb_011236_010 Hb_000699_090--Hb_011236_010 Hb_000699_090--Hb_000906_040 Hb_000577_090 Hb_000577_090 Hb_000699_090--Hb_000577_090 Hb_000265_050 Hb_000265_050 Hb_000699_090--Hb_000265_050 Hb_004223_040 Hb_004223_040 Hb_000699_090--Hb_004223_040 Hb_000699_090--Hb_000574_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5651 22.0896 12.8661 10.2738 12.3383 10.4543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5579 84.7691 36.8852 11.2965 17.7311

CAGE analysis