Hb_001565_080

Information

Type -
Description -
Location Contig1565: 60733-61364
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09490g
description hypothetical protein
nr
ID XP_012076870.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
swissprot
ID Q9SP35
description Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2
trembl
ID A0A067KNE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07366 PE=4 SV=1
Gene Ontology
ID GO:0005744
description mitochondrial import inner membrane translocase subunit tim17-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13611: 60480-61514
cDNA
(Sanger)
(ID:Location)		 041_A06.ab1: 61096-61434

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001565_080 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
2 Hb_000349_290 0.0665035465 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
3 Hb_000215_060 0.0713941674 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
4 Hb_000363_480 0.0798962102 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
5 Hb_032260_030 0.0885731813 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
6 Hb_000331_700 0.0941306154 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
7 Hb_000881_080 0.0987343694 - - conserved hypothetical protein [Ricinus communis]
8 Hb_015807_100 0.0991222182 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_000136_170 0.1009125296 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
10 Hb_002006_130 0.102096313 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
11 Hb_003398_120 0.1022518597 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
12 Hb_011311_010 0.1040269598 - - 60S ribosomal protein L27C [Hevea brasiliensis]
13 Hb_004543_040 0.104997221 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_008921_020 0.1050902438 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
15 Hb_000264_090 0.1055616106 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
16 Hb_000115_230 0.1076648579 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_000496_120 0.1091646306 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
18 Hb_002925_030 0.1101074482 - - 40S ribosomal protein S16B [Hevea brasiliensis]
19 Hb_003226_210 0.1111347241 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
20 Hb_007304_070 0.1117541851 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001565_080 Hb_001565_080 Hb_000349_290 Hb_000349_290 Hb_001565_080--Hb_000349_290 Hb_000215_060 Hb_000215_060 Hb_001565_080--Hb_000215_060 Hb_000363_480 Hb_000363_480 Hb_001565_080--Hb_000363_480 Hb_032260_030 Hb_032260_030 Hb_001565_080--Hb_032260_030 Hb_000331_700 Hb_000331_700 Hb_001565_080--Hb_000331_700 Hb_000881_080 Hb_000881_080 Hb_001565_080--Hb_000881_080 Hb_003185_050 Hb_003185_050 Hb_000349_290--Hb_003185_050 Hb_000349_290--Hb_000215_060 Hb_000349_290--Hb_000363_480 Hb_000905_180 Hb_000905_180 Hb_000349_290--Hb_000905_180 Hb_011173_050 Hb_011173_050 Hb_000349_290--Hb_011173_050 Hb_000215_060--Hb_000363_480 Hb_000175_060 Hb_000175_060 Hb_000215_060--Hb_000175_060 Hb_000496_120 Hb_000496_120 Hb_000215_060--Hb_000496_120 Hb_000215_060--Hb_011173_050 Hb_000574_480 Hb_000574_480 Hb_000363_480--Hb_000574_480 Hb_003226_210 Hb_003226_210 Hb_000363_480--Hb_003226_210 Hb_001998_050 Hb_001998_050 Hb_000363_480--Hb_001998_050 Hb_003656_070 Hb_003656_070 Hb_000363_480--Hb_003656_070 Hb_001214_160 Hb_001214_160 Hb_000363_480--Hb_001214_160 Hb_001016_090 Hb_001016_090 Hb_032260_030--Hb_001016_090 Hb_032260_030--Hb_000881_080 Hb_002925_030 Hb_002925_030 Hb_032260_030--Hb_002925_030 Hb_005883_100 Hb_005883_100 Hb_032260_030--Hb_005883_100 Hb_001863_090 Hb_001863_090 Hb_032260_030--Hb_001863_090 Hb_003398_120 Hb_003398_120 Hb_032260_030--Hb_003398_120 Hb_003044_090 Hb_003044_090 Hb_000331_700--Hb_003044_090 Hb_002811_080 Hb_002811_080 Hb_000331_700--Hb_002811_080 Hb_002588_010 Hb_002588_010 Hb_000331_700--Hb_002588_010 Hb_000567_410 Hb_000567_410 Hb_000331_700--Hb_000567_410 Hb_011311_010 Hb_011311_010 Hb_000331_700--Hb_011311_010 Hb_007497_030 Hb_007497_030 Hb_000331_700--Hb_007497_030 Hb_007304_070 Hb_007304_070 Hb_000881_080--Hb_007304_070 Hb_000881_080--Hb_000905_180 Hb_000881_080--Hb_001016_090 Hb_000236_150 Hb_000236_150 Hb_000881_080--Hb_000236_150 Hb_001780_050 Hb_001780_050 Hb_000881_080--Hb_001780_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3827 27.3092 9.36118 26.7551 19.1509 28.9134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.7057 118.92 46.9191 28.5786 10.412

CAGE analysis