Hb_000496_120

Information

Type -
Description -
Location Contig496: 93956-98142
Sequence    

Annotation

kegg
ID rcu:RCOM_0992740
description Protein mrp, putative
nr
ID XP_012092084.1
description PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
swissprot
ID Q54F15
description Iron-sulfur protein NUBPL OS=Dictyostelium discoideum GN=nubpl PE=3 SV=1
trembl
ID A0A067JF08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21819 PE=4 SV=1
Gene Ontology
ID GO:0005739
description iron-sulfur protein nubpl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000496_120 0.0 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
2 Hb_000215_060 0.0722942041 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
3 Hb_091433_020 0.0746061216 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
4 Hb_033642_080 0.074887823 - - V-type proton ATPase subunit E [Hevea brasiliensis]
5 Hb_004216_050 0.0755647446 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
6 Hb_001814_050 0.0781358959 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_005305_150 0.0783667755 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
8 Hb_011671_100 0.0787576623 - - 60S ribosomal protein L15 [Populus trichocarpa]
9 Hb_000009_460 0.0809820966 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007441_040 0.0869084578 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
11 Hb_004567_120 0.0879901773 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
12 Hb_005568_120 0.0881408653 - - Prephenate dehydratase [Hevea brasiliensis]
13 Hb_006478_150 0.0884155457 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
14 Hb_004767_080 0.0887933257 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
15 Hb_000417_360 0.08899869 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
16 Hb_000363_480 0.0893353432 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
17 Hb_001653_020 0.0899637452 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
18 Hb_006816_530 0.0901341162 - - 60S ribosomal protein L18, putative [Ricinus communis]
19 Hb_004543_040 0.0931440272 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_003787_010 0.0942117461 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]

Gene co-expression network

sample Hb_000496_120 Hb_000496_120 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_091433_020 Hb_091433_020 Hb_000496_120--Hb_091433_020 Hb_033642_080 Hb_033642_080 Hb_000496_120--Hb_033642_080 Hb_004216_050 Hb_004216_050 Hb_000496_120--Hb_004216_050 Hb_001814_050 Hb_001814_050 Hb_000496_120--Hb_001814_050 Hb_005305_150 Hb_005305_150 Hb_000496_120--Hb_005305_150 Hb_000363_480 Hb_000363_480 Hb_000215_060--Hb_000363_480 Hb_001565_080 Hb_001565_080 Hb_000215_060--Hb_001565_080 Hb_000175_060 Hb_000175_060 Hb_000215_060--Hb_000175_060 Hb_000349_290 Hb_000349_290 Hb_000215_060--Hb_000349_290 Hb_011173_050 Hb_011173_050 Hb_000215_060--Hb_011173_050 Hb_000417_360 Hb_000417_360 Hb_091433_020--Hb_000417_360 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_004567_120 Hb_004567_120 Hb_033642_080--Hb_004567_120 Hb_033642_080--Hb_000417_360 Hb_006478_150 Hb_006478_150 Hb_033642_080--Hb_006478_150 Hb_180074_010 Hb_180074_010 Hb_033642_080--Hb_180074_010 Hb_004216_050--Hb_004567_120 Hb_004216_050--Hb_005305_150 Hb_004216_050--Hb_006478_150 Hb_010068_020 Hb_010068_020 Hb_004216_050--Hb_010068_020 Hb_004216_050--Hb_004767_080 Hb_006816_530 Hb_006816_530 Hb_001814_050--Hb_006816_530 Hb_004375_100 Hb_004375_100 Hb_001814_050--Hb_004375_100 Hb_004157_030 Hb_004157_030 Hb_001814_050--Hb_004157_030 Hb_009793_010 Hb_009793_010 Hb_001814_050--Hb_009793_010 Hb_002043_130 Hb_002043_130 Hb_001814_050--Hb_002043_130 Hb_001505_020 Hb_001505_020 Hb_001814_050--Hb_001505_020 Hb_003098_020 Hb_003098_020 Hb_005305_150--Hb_003098_020 Hb_005305_150--Hb_004767_080 Hb_001545_170 Hb_001545_170 Hb_005305_150--Hb_001545_170 Hb_005305_150--Hb_001814_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0906 2.18166 1.66283 3.13536 1.83602 3.43874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43027 8.84889 4.61854 4.61326 1.27075

CAGE analysis