Hb_004767_080

Information

Type -
Description -
Location Contig4767: 68411-72044
Sequence    

Annotation

kegg
ID tcc:TCM_041551
description Mitochondria isoform 1
nr
ID XP_012064651.1
description PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L682
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05399 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial atpase complex subunit atp10 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44510: 68392-72035
cDNA
(Sanger)
(ID:Location)		 011_H07.ab1: 69683-72033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004767_080 0.0 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
2 Hb_005305_150 0.0595634104 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
3 Hb_018124_010 0.0724411846 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
4 Hb_091433_020 0.0732612963 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
5 Hb_011671_100 0.073886951 - - 60S ribosomal protein L15 [Populus trichocarpa]
6 Hb_000417_360 0.0748862678 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
7 Hb_002056_050 0.0762720141 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
8 Hb_004216_050 0.0764099983 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
9 Hb_003787_010 0.0764835843 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
10 Hb_001545_170 0.0765186152 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
11 Hb_007928_030 0.077432519 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
12 Hb_000217_030 0.0784813554 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
13 Hb_010068_020 0.0790856675 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
14 Hb_000920_110 0.0792985909 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
15 Hb_012490_070 0.0799217831 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000735_090 0.079964023 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
17 Hb_000571_020 0.0804948247 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
18 Hb_007441_040 0.0815580682 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
19 Hb_001863_430 0.0823814817 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
20 Hb_009182_010 0.0829444361 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004767_080 Hb_004767_080 Hb_005305_150 Hb_005305_150 Hb_004767_080--Hb_005305_150 Hb_018124_010 Hb_018124_010 Hb_004767_080--Hb_018124_010 Hb_091433_020 Hb_091433_020 Hb_004767_080--Hb_091433_020 Hb_011671_100 Hb_011671_100 Hb_004767_080--Hb_011671_100 Hb_000417_360 Hb_000417_360 Hb_004767_080--Hb_000417_360 Hb_002056_050 Hb_002056_050 Hb_004767_080--Hb_002056_050 Hb_003098_020 Hb_003098_020 Hb_005305_150--Hb_003098_020 Hb_004216_050 Hb_004216_050 Hb_005305_150--Hb_004216_050 Hb_001545_170 Hb_001545_170 Hb_005305_150--Hb_001545_170 Hb_000496_120 Hb_000496_120 Hb_005305_150--Hb_000496_120 Hb_001814_050 Hb_001814_050 Hb_005305_150--Hb_001814_050 Hb_143766_010 Hb_143766_010 Hb_018124_010--Hb_143766_010 Hb_003787_010 Hb_003787_010 Hb_018124_010--Hb_003787_010 Hb_004052_050 Hb_004052_050 Hb_018124_010--Hb_004052_050 Hb_018124_010--Hb_000417_360 Hb_000701_100 Hb_000701_100 Hb_018124_010--Hb_000701_100 Hb_091433_020--Hb_000417_360 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_091433_020--Hb_000496_120 Hb_091433_020--Hb_011671_100 Hb_001691_140 Hb_001691_140 Hb_011671_100--Hb_001691_140 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_015279_010 Hb_015279_010 Hb_011671_100--Hb_015279_010 Hb_011671_100--Hb_000417_360 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003226_100 Hb_003226_100 Hb_002056_050--Hb_003226_100 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.66997 3.82915 5.8108 8.3998 5.25283 6.44204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1179 19.3913 9.93132 10.1072 5.20187

CAGE analysis