Hb_001287_030

Information

Type -
Description -
Location Contig1287: 67963-72286
Sequence    

Annotation

kegg
ID rcu:RCOM_1450700
description 30S ribosomal protein S31, mitochondrial precursor, putative
nr
ID XP_002513001.1
description 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID P47909
description 30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0528100 PE=3 SV=2
trembl
ID B9RHE2
description 30S ribosomal protein S31, mitochondrial, putative OS=Ricinus communis GN=RCOM_1450700 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 052_F02.ab1: 67930-68481

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001287_030 0.0 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
2 Hb_034406_020 0.0993366694 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
3 Hb_005463_040 0.1028272779 - - signal transducer, putative [Ricinus communis]
4 Hb_000732_130 0.1083052218 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
5 Hb_001292_020 0.1095081856 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
6 Hb_008221_140 0.1106101308 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
7 Hb_004586_170 0.1121771692 - - hypothetical protein PRUPE_ppa011196mg [Prunus persica]
8 Hb_000366_090 0.1131567525 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
9 Hb_007044_060 0.1164268332 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001047_230 0.1167812993 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000563_250 0.1185186407 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
12 Hb_002235_350 0.1195304953 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
13 Hb_002835_180 0.119586243 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_002878_020 0.1217855197 - - mitochondrial carrier protein, putative [Ricinus communis]
15 Hb_000167_140 0.123019347 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
16 Hb_026549_040 0.1235497727 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
17 Hb_006031_020 0.1244982044 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
18 Hb_001616_030 0.1245450081 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
19 Hb_012753_160 0.1250393789 - - ara4-interacting protein, putative [Ricinus communis]
20 Hb_028486_030 0.125124583 - - hypothetical protein JCGZ_12706 [Jatropha curcas]

Gene co-expression network

sample Hb_001287_030 Hb_001287_030 Hb_034406_020 Hb_034406_020 Hb_001287_030--Hb_034406_020 Hb_005463_040 Hb_005463_040 Hb_001287_030--Hb_005463_040 Hb_000732_130 Hb_000732_130 Hb_001287_030--Hb_000732_130 Hb_001292_020 Hb_001292_020 Hb_001287_030--Hb_001292_020 Hb_008221_140 Hb_008221_140 Hb_001287_030--Hb_008221_140 Hb_004586_170 Hb_004586_170 Hb_001287_030--Hb_004586_170 Hb_021409_030 Hb_021409_030 Hb_034406_020--Hb_021409_030 Hb_000258_170 Hb_000258_170 Hb_034406_020--Hb_000258_170 Hb_000072_080 Hb_000072_080 Hb_034406_020--Hb_000072_080 Hb_007044_060 Hb_007044_060 Hb_034406_020--Hb_007044_060 Hb_019654_090 Hb_019654_090 Hb_034406_020--Hb_019654_090 Hb_005463_040--Hb_008221_140 Hb_086639_030 Hb_086639_030 Hb_005463_040--Hb_086639_030 Hb_002183_090 Hb_002183_090 Hb_005463_040--Hb_002183_090 Hb_012675_060 Hb_012675_060 Hb_005463_040--Hb_012675_060 Hb_006031_020 Hb_006031_020 Hb_005463_040--Hb_006031_020 Hb_000384_100 Hb_000384_100 Hb_005463_040--Hb_000384_100 Hb_011214_020 Hb_011214_020 Hb_000732_130--Hb_011214_020 Hb_000251_130 Hb_000251_130 Hb_000732_130--Hb_000251_130 Hb_000732_130--Hb_000384_100 Hb_000732_130--Hb_008221_140 Hb_002878_020 Hb_002878_020 Hb_000732_130--Hb_002878_020 Hb_004306_100 Hb_004306_100 Hb_000732_130--Hb_004306_100 Hb_026549_040 Hb_026549_040 Hb_001292_020--Hb_026549_040 Hb_002942_190 Hb_002942_190 Hb_001292_020--Hb_002942_190 Hb_002686_020 Hb_002686_020 Hb_001292_020--Hb_002686_020 Hb_004048_110 Hb_004048_110 Hb_001292_020--Hb_004048_110 Hb_008878_030 Hb_008878_030 Hb_001292_020--Hb_008878_030 Hb_002232_440 Hb_002232_440 Hb_001292_020--Hb_002232_440 Hb_000676_180 Hb_000676_180 Hb_008221_140--Hb_000676_180 Hb_008221_140--Hb_002183_090 Hb_001226_040 Hb_001226_040 Hb_008221_140--Hb_001226_040 Hb_000167_140 Hb_000167_140 Hb_008221_140--Hb_000167_140 Hb_000085_050 Hb_000085_050 Hb_008221_140--Hb_000085_050 Hb_000788_090 Hb_000788_090 Hb_004586_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_004586_170--Hb_001047_230 Hb_004586_170--Hb_004306_100 Hb_000979_200 Hb_000979_200 Hb_004586_170--Hb_000979_200 Hb_004586_170--Hb_000732_130 Hb_028486_030 Hb_028486_030 Hb_004586_170--Hb_028486_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8749 13.9817 11.2826 3.30383 14.0812 12.7808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5912 50.8866 34.3875 15.9851 14.8582

CAGE analysis