Hb_006031_020

Information

Type -
Description -
Location Contig6031: 25372-32431
Sequence    

Annotation

kegg
ID rcu:RCOM_1358870
description hypothetical protein
nr
ID XP_012078519.1
description PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
swissprot
ID Q93V84
description Protein FLX-like 1 OS=Arabidopsis thaliana GN=FLXL1 PE=1 SV=1
trembl
ID A0A067LEW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17345 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50675: 25248-32292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006031_020 0.0 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
2 Hb_011867_010 0.0693157008 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
3 Hb_002226_070 0.0699527578 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
4 Hb_002183_090 0.0755596817 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
5 Hb_000059_370 0.0756922543 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
6 Hb_007416_030 0.0759972014 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
7 Hb_002686_020 0.0760340343 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
8 Hb_002609_020 0.0765488678 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
9 Hb_000384_100 0.0779876504 - - hydrolase, putative [Ricinus communis]
10 Hb_012753_160 0.0787958 - - ara4-interacting protein, putative [Ricinus communis]
11 Hb_000056_200 0.0802145678 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
12 Hb_000676_180 0.0816328792 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
13 Hb_075449_010 0.0825968683 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
14 Hb_001821_010 0.082992483 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
15 Hb_003050_080 0.0836598877 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_005463_040 0.083667844 - - signal transducer, putative [Ricinus communis]
17 Hb_002044_080 0.0857336138 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
18 Hb_000479_090 0.0858014129 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
19 Hb_001105_030 0.0873649482 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
20 Hb_000479_010 0.0875575024 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_006031_020 Hb_006031_020 Hb_011867_010 Hb_011867_010 Hb_006031_020--Hb_011867_010 Hb_002226_070 Hb_002226_070 Hb_006031_020--Hb_002226_070 Hb_002183_090 Hb_002183_090 Hb_006031_020--Hb_002183_090 Hb_000059_370 Hb_000059_370 Hb_006031_020--Hb_000059_370 Hb_007416_030 Hb_007416_030 Hb_006031_020--Hb_007416_030 Hb_002686_020 Hb_002686_020 Hb_006031_020--Hb_002686_020 Hb_000069_110 Hb_000069_110 Hb_011867_010--Hb_000069_110 Hb_002609_020 Hb_002609_020 Hb_011867_010--Hb_002609_020 Hb_001703_030 Hb_001703_030 Hb_011867_010--Hb_001703_030 Hb_000270_270 Hb_000270_270 Hb_011867_010--Hb_000270_270 Hb_000479_010 Hb_000479_010 Hb_011867_010--Hb_000479_010 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_002226_070--Hb_000059_370 Hb_000085_050 Hb_000085_050 Hb_002183_090--Hb_000085_050 Hb_000976_170 Hb_000976_170 Hb_002183_090--Hb_000976_170 Hb_000384_100 Hb_000384_100 Hb_002183_090--Hb_000384_100 Hb_002183_090--Hb_033834_040 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_000608_370 Hb_000608_370 Hb_007416_030--Hb_000608_370 Hb_007416_030--Hb_002686_020 Hb_000788_090 Hb_000788_090 Hb_007416_030--Hb_000788_090 Hb_002864_050 Hb_002864_050 Hb_007416_030--Hb_002864_050 Hb_001047_230 Hb_001047_230 Hb_007416_030--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_007416_030--Hb_003683_110 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_001540_010 Hb_001540_010 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_002686_020--Hb_001821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2339 10.3544 11.8865 10.4651 24.1698 19.4298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2086 46.2068 29.7092 13.9314 13.5324

CAGE analysis