Hb_004306_100

Information

Type -
Description -
Location Contig4306: 64231-66771
Sequence    

Annotation

kegg
ID rcu:RCOM_1719990
description hypothetical protein
nr
ID XP_012085102.1
description PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
swissprot
ID Q0WNW4
description Myosin-binding protein 3 OS=Arabidopsis thaliana GN=MYOB3 PE=1 SV=1
trembl
ID A0A067JUA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17541 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42180: 64017-67886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_100 0.0 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
2 Hb_000732_130 0.0889945051 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
3 Hb_002256_020 0.0955750171 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004586_170 0.0978092237 - - hypothetical protein PRUPE_ppa011196mg [Prunus persica]
5 Hb_004324_370 0.0993114903 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
6 Hb_000723_080 0.1023843603 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
7 Hb_001699_130 0.1052219642 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
8 Hb_000482_010 0.1108347931 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
9 Hb_011214_020 0.1172793524 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
10 Hb_004128_060 0.118455174 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
11 Hb_000696_150 0.1201164235 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
12 Hb_000120_680 0.1228818786 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
13 Hb_000072_080 0.1229530789 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
14 Hb_011173_050 0.123137707 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
15 Hb_002235_280 0.1236801349 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
16 Hb_008623_020 0.1238520867 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
17 Hb_004586_340 0.1259467211 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
18 Hb_000193_290 0.1260034078 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
19 Hb_001863_390 0.127913699 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
20 Hb_000251_130 0.12907642 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]

Gene co-expression network

sample Hb_004306_100 Hb_004306_100 Hb_000732_130 Hb_000732_130 Hb_004306_100--Hb_000732_130 Hb_002256_020 Hb_002256_020 Hb_004306_100--Hb_002256_020 Hb_004586_170 Hb_004586_170 Hb_004306_100--Hb_004586_170 Hb_004324_370 Hb_004324_370 Hb_004306_100--Hb_004324_370 Hb_000723_080 Hb_000723_080 Hb_004306_100--Hb_000723_080 Hb_001699_130 Hb_001699_130 Hb_004306_100--Hb_001699_130 Hb_011214_020 Hb_011214_020 Hb_000732_130--Hb_011214_020 Hb_000251_130 Hb_000251_130 Hb_000732_130--Hb_000251_130 Hb_000384_100 Hb_000384_100 Hb_000732_130--Hb_000384_100 Hb_008221_140 Hb_008221_140 Hb_000732_130--Hb_008221_140 Hb_002878_020 Hb_002878_020 Hb_000732_130--Hb_002878_020 Hb_002256_020--Hb_000723_080 Hb_000928_210 Hb_000928_210 Hb_002256_020--Hb_000928_210 Hb_000230_510 Hb_000230_510 Hb_002256_020--Hb_000230_510 Hb_008623_020 Hb_008623_020 Hb_002256_020--Hb_008623_020 Hb_002256_020--Hb_000732_130 Hb_000788_090 Hb_000788_090 Hb_004586_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_004586_170--Hb_001047_230 Hb_000979_200 Hb_000979_200 Hb_004586_170--Hb_000979_200 Hb_004586_170--Hb_000732_130 Hb_028486_030 Hb_028486_030 Hb_004586_170--Hb_028486_030 Hb_000193_290 Hb_000193_290 Hb_004324_370--Hb_000193_290 Hb_055062_030 Hb_055062_030 Hb_004324_370--Hb_055062_030 Hb_000457_150 Hb_000457_150 Hb_004324_370--Hb_000457_150 Hb_006949_050 Hb_006949_050 Hb_004324_370--Hb_006949_050 Hb_000554_020 Hb_000554_020 Hb_004324_370--Hb_000554_020 Hb_002399_010 Hb_002399_010 Hb_004324_370--Hb_002399_010 Hb_008695_100 Hb_008695_100 Hb_000723_080--Hb_008695_100 Hb_000567_120 Hb_000567_120 Hb_000723_080--Hb_000567_120 Hb_016901_010 Hb_016901_010 Hb_000723_080--Hb_016901_010 Hb_001140_220 Hb_001140_220 Hb_000723_080--Hb_001140_220 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030 Hb_000617_150 Hb_000617_150 Hb_001699_130--Hb_000617_150 Hb_000696_040 Hb_000696_040 Hb_001699_130--Hb_000696_040 Hb_000120_680 Hb_000120_680 Hb_001699_130--Hb_000120_680 Hb_001699_130--Hb_000723_080 Hb_010608_050 Hb_010608_050 Hb_001699_130--Hb_010608_050 Hb_001699_130--Hb_016901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7594 20.1659 3.2408 8.15934 17.3606 15.1405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.923 41.3546 30.3062 7.70508 12.437

CAGE analysis