Hb_007044_060

Information

Type -
Description -
Location Contig7044: 25798-33254
Sequence    

Annotation

kegg
ID rcu:RCOM_0279180
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002533638.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9FFW5
description Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1
trembl
ID B9T5W9
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0279180 PE=3 SV=1
Gene Ontology
ID GO:0005622
description proline-rich receptor-like protein kinase perk8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55004: 25606-26401 , PASA_asmbl_55006: 26998-28605 , PASA_asmbl_55007: 30759-32005 , PASA_asmbl_55008: 32553-33247
cDNA
(Sanger)
(ID:Location)		 009_M01.ab1: 25606-26354 , 017_G22.ab1: 25606-26401 , 036_A16.ab1: 25606-26335

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_060 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001269_170 0.0965911485 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
3 Hb_034406_020 0.0986034737 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
4 Hb_002397_070 0.1098912399 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
5 Hb_002231_030 0.1133379159 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
6 Hb_000072_080 0.1158029953 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
7 Hb_001287_030 0.1164268332 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
8 Hb_003994_250 0.1178532151 - - membrane associated ring finger 1,8, putative [Ricinus communis]
9 Hb_000574_160 0.1188147883 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
10 Hb_002235_350 0.1196638389 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
11 Hb_138585_060 0.1205293 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
12 Hb_000282_070 0.1210306377 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
13 Hb_000906_040 0.1214981466 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
14 Hb_000331_700 0.1248804089 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
15 Hb_003326_020 0.1254686918 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
16 Hb_019253_030 0.1261170626 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
17 Hb_003044_090 0.1263744632 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
18 Hb_001143_080 0.1265815134 - - PREDICTED: F-box protein 7 [Jatropha curcas]
19 Hb_000258_170 0.1266423318 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
20 Hb_005511_160 0.1277173151 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]

Gene co-expression network

sample Hb_007044_060 Hb_007044_060 Hb_001269_170 Hb_001269_170 Hb_007044_060--Hb_001269_170 Hb_034406_020 Hb_034406_020 Hb_007044_060--Hb_034406_020 Hb_002397_070 Hb_002397_070 Hb_007044_060--Hb_002397_070 Hb_002231_030 Hb_002231_030 Hb_007044_060--Hb_002231_030 Hb_000072_080 Hb_000072_080 Hb_007044_060--Hb_000072_080 Hb_001287_030 Hb_001287_030 Hb_007044_060--Hb_001287_030 Hb_001143_080 Hb_001143_080 Hb_001269_170--Hb_001143_080 Hb_004375_100 Hb_004375_100 Hb_001269_170--Hb_004375_100 Hb_012753_160 Hb_012753_160 Hb_001269_170--Hb_012753_160 Hb_000136_170 Hb_000136_170 Hb_001269_170--Hb_000136_170 Hb_005463_040 Hb_005463_040 Hb_001269_170--Hb_005463_040 Hb_021409_030 Hb_021409_030 Hb_034406_020--Hb_021409_030 Hb_000258_170 Hb_000258_170 Hb_034406_020--Hb_000258_170 Hb_034406_020--Hb_000072_080 Hb_034406_020--Hb_001287_030 Hb_019654_090 Hb_019654_090 Hb_034406_020--Hb_019654_090 Hb_001504_100 Hb_001504_100 Hb_002397_070--Hb_001504_100 Hb_003992_240 Hb_003992_240 Hb_002397_070--Hb_003992_240 Hb_004931_090 Hb_004931_090 Hb_002397_070--Hb_004931_090 Hb_004586_170 Hb_004586_170 Hb_002397_070--Hb_004586_170 Hb_000574_160 Hb_000574_160 Hb_002397_070--Hb_000574_160 Hb_003044_090 Hb_003044_090 Hb_002231_030--Hb_003044_090 Hb_000997_190 Hb_000997_190 Hb_002231_030--Hb_000997_190 Hb_000906_040 Hb_000906_040 Hb_002231_030--Hb_000906_040 Hb_000487_230 Hb_000487_230 Hb_002231_030--Hb_000487_230 Hb_000699_090 Hb_000699_090 Hb_002231_030--Hb_000699_090 Hb_000072_080--Hb_012753_160 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_000072_080--Hb_021409_030 Hb_000072_080--Hb_001143_080 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680 Hb_001287_030--Hb_005463_040 Hb_000732_130 Hb_000732_130 Hb_001287_030--Hb_000732_130 Hb_001292_020 Hb_001292_020 Hb_001287_030--Hb_001292_020 Hb_008221_140 Hb_008221_140 Hb_001287_030--Hb_008221_140 Hb_001287_030--Hb_004586_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7449 5.20242 4.0507 3.48717 4.78744 6.60777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.49672 32.4404 16.6643 5.8202 5.80504

CAGE analysis