Hb_004048_110

Information

Type -
Description -
Location Contig4048: 100043-107555
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G019700g
description hypothetical protein
nr
ID XP_007131519.1
description hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
swissprot
ID A2RVP7
description Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis thaliana GN=TIM22-1 PE=1 SV=1
trembl
ID V7AF85
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G019700g PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim22-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40157: 107367-107481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_110 0.0 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
2 Hb_008878_030 0.0656986874 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
3 Hb_153112_020 0.0766563427 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
4 Hb_001292_020 0.0780621501 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
5 Hb_002214_040 0.0783732531 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
6 Hb_012725_050 0.0792505725 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
7 Hb_001545_140 0.07977429 transcription factor TF Family: NAC -
8 Hb_000331_080 0.0803698055 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
9 Hb_002477_070 0.0818037518 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
10 Hb_009838_080 0.0824375998 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_002918_200 0.0832679447 - - -
12 Hb_004837_140 0.0835993474 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
13 Hb_002686_020 0.0862863667 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
14 Hb_004108_230 0.0870225555 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
15 Hb_000270_270 0.0871538221 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
16 Hb_112798_030 0.0874651121 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012338_010 0.0911127916 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003050_080 0.0934331047 - - 40S ribosomal protein S14, putative [Ricinus communis]
19 Hb_001140_060 0.0934532858 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
20 Hb_009686_030 0.0936005638 - - -

Gene co-expression network

sample Hb_004048_110 Hb_004048_110 Hb_008878_030 Hb_008878_030 Hb_004048_110--Hb_008878_030 Hb_153112_020 Hb_153112_020 Hb_004048_110--Hb_153112_020 Hb_001292_020 Hb_001292_020 Hb_004048_110--Hb_001292_020 Hb_002214_040 Hb_002214_040 Hb_004048_110--Hb_002214_040 Hb_012725_050 Hb_012725_050 Hb_004048_110--Hb_012725_050 Hb_001545_140 Hb_001545_140 Hb_004048_110--Hb_001545_140 Hb_000331_080 Hb_000331_080 Hb_008878_030--Hb_000331_080 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_002686_020 Hb_002686_020 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080 Hb_026549_040 Hb_026549_040 Hb_001292_020--Hb_026549_040 Hb_002942_190 Hb_002942_190 Hb_001292_020--Hb_002942_190 Hb_001292_020--Hb_002686_020 Hb_001292_020--Hb_008878_030 Hb_002232_440 Hb_002232_440 Hb_001292_020--Hb_002232_440 Hb_000529_190 Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_001105_030 Hb_001105_030 Hb_012725_050--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_012725_050--Hb_001157_020 Hb_001821_010 Hb_001821_010 Hb_012725_050--Hb_001821_010 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_012725_050--Hb_002214_040 Hb_012725_050--Hb_000331_080 Hb_001545_140--Hb_008878_030 Hb_001545_140--Hb_004837_140 Hb_002097_110 Hb_002097_110 Hb_001545_140--Hb_002097_110 Hb_000189_620 Hb_000189_620 Hb_001545_140--Hb_000189_620 Hb_027472_180 Hb_027472_180 Hb_001545_140--Hb_027472_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.47514 1.34948 4.47441 2.83272 8.0547 8.04327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7071 15.56 10.9899 4.63 5.45594

CAGE analysis