Hb_010812_040

Information

Type transcription factor
Description TF Family: SNF2
Location Contig10812: 9373-31218
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08910g
description hypothetical protein
nr
ID XP_012091123.1
description PREDICTED: E3 ubiquitin-protein ligase SHPRH [Jatropha curcas]
swissprot
ID Q7TPQ3
description E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1
trembl
ID U5FI64
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08910g PE=4 SV=1
Gene Ontology
ID GO:0003677
description e3 ubiquitin-protein ligase shprh

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02479: 10678-15505 , PASA_asmbl_02480: 15515-18127 , PASA_asmbl_02481: 17131-18115 , PASA_asmbl_02483: 19213-19425 , PASA_asmbl_02484: 20368-21238 , PASA_asmbl_02485: 21252-21709 , PASA_asmbl_02486: 21770-25257 , PASA_asmbl_02487: 25382-26800 , PASA_asmbl_02488: 26835-31478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_040 0.0 transcription factor TF Family: SNF2 PREDICTED: E3 ubiquitin-protein ligase SHPRH [Jatropha curcas]
2 Hb_001860_050 0.1311860794 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
3 Hb_003540_240 0.1339417542 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
4 Hb_000046_050 0.138264672 - - PREDICTED: LEC14B homolog [Jatropha curcas]
5 Hb_000300_080 0.1392364276 - - PREDICTED: probable S-sulfocysteine synthase, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_001513_010 0.1397501889 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000487_230 0.1463005408 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
8 Hb_006198_070 0.1481244216 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
9 Hb_000510_290 0.1520814554 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
10 Hb_000723_040 0.1528184484 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
11 Hb_000441_110 0.1528258709 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
12 Hb_026527_050 0.1540026871 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
13 Hb_013607_030 0.1543002275 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
14 Hb_000028_100 0.1546530037 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
15 Hb_000061_210 0.1574797362 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
16 Hb_011457_050 0.1581362123 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
17 Hb_000739_300 0.1596776969 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
18 Hb_005162_060 0.1613427428 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
19 Hb_018272_020 0.1614635748 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
20 Hb_007220_010 0.1618694272 - - PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_010812_040 Hb_010812_040 Hb_001860_050 Hb_001860_050 Hb_010812_040--Hb_001860_050 Hb_003540_240 Hb_003540_240 Hb_010812_040--Hb_003540_240 Hb_000046_050 Hb_000046_050 Hb_010812_040--Hb_000046_050 Hb_000300_080 Hb_000300_080 Hb_010812_040--Hb_000300_080 Hb_001513_010 Hb_001513_010 Hb_010812_040--Hb_001513_010 Hb_000487_230 Hb_000487_230 Hb_010812_040--Hb_000487_230 Hb_008554_130 Hb_008554_130 Hb_001860_050--Hb_008554_130 Hb_002154_100 Hb_002154_100 Hb_001860_050--Hb_002154_100 Hb_000329_710 Hb_000329_710 Hb_001860_050--Hb_000329_710 Hb_005496_130 Hb_005496_130 Hb_001860_050--Hb_005496_130 Hb_002391_310 Hb_002391_310 Hb_001860_050--Hb_002391_310 Hb_000635_250 Hb_000635_250 Hb_001860_050--Hb_000635_250 Hb_002056_050 Hb_002056_050 Hb_003540_240--Hb_002056_050 Hb_000441_110 Hb_000441_110 Hb_003540_240--Hb_000441_110 Hb_002235_350 Hb_002235_350 Hb_003540_240--Hb_002235_350 Hb_004127_020 Hb_004127_020 Hb_003540_240--Hb_004127_020 Hb_000169_040 Hb_000169_040 Hb_003540_240--Hb_000169_040 Hb_002798_020 Hb_002798_020 Hb_003540_240--Hb_002798_020 Hb_004324_270 Hb_004324_270 Hb_000046_050--Hb_004324_270 Hb_012675_050 Hb_012675_050 Hb_000046_050--Hb_012675_050 Hb_032264_070 Hb_032264_070 Hb_000046_050--Hb_032264_070 Hb_000046_050--Hb_003540_240 Hb_000061_210 Hb_000061_210 Hb_000046_050--Hb_000061_210 Hb_000107_160 Hb_000107_160 Hb_000046_050--Hb_000107_160 Hb_000723_040 Hb_000723_040 Hb_000300_080--Hb_000723_040 Hb_003942_020 Hb_003942_020 Hb_000300_080--Hb_003942_020 Hb_000075_040 Hb_000075_040 Hb_000300_080--Hb_000075_040 Hb_009659_050 Hb_009659_050 Hb_000300_080--Hb_009659_050 Hb_004055_170 Hb_004055_170 Hb_000300_080--Hb_004055_170 Hb_011360_070 Hb_011360_070 Hb_001513_010--Hb_011360_070 Hb_001513_010--Hb_004127_020 Hb_001513_010--Hb_000061_210 Hb_000614_220 Hb_000614_220 Hb_001513_010--Hb_000614_220 Hb_000979_200 Hb_000979_200 Hb_001513_010--Hb_000979_200 Hb_023278_020 Hb_023278_020 Hb_001513_010--Hb_023278_020 Hb_000487_230--Hb_000441_110 Hb_002231_030 Hb_002231_030 Hb_000487_230--Hb_002231_030 Hb_000086_230 Hb_000086_230 Hb_000487_230--Hb_000086_230 Hb_000699_090 Hb_000699_090 Hb_000487_230--Hb_000699_090 Hb_003992_240 Hb_003992_240 Hb_000487_230--Hb_003992_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22155 6.23697 4.32055 3.14554 4.88135 5.22953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.39472 16.4927 4.42272 4.02529 10.138

CAGE analysis