Hb_001513_010

Information

Type -
Description -
Location Contig1513: 37846-38352
Sequence    

Annotation

kegg
ID rcu:RCOM_1174240
description hypothetical protein
nr
ID XP_002517908.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVY9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1174240 PE=4 SV=1
Gene Ontology
ID GO:0006661
description pyrroline-5-carboxylate reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12815: 37738-38602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001513_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011360_070 0.1077126714 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
3 Hb_004127_020 0.1195651186 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
4 Hb_000061_210 0.1208856246 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
5 Hb_000614_220 0.1214988581 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
6 Hb_000979_200 0.1261739462 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
7 Hb_023278_020 0.1272681829 - - Peroxin 3 isoform 1 [Theobroma cacao]
8 Hb_082609_010 0.1275188442 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
9 Hb_018272_020 0.1286095291 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
10 Hb_005162_060 0.1288243238 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
11 Hb_000337_050 0.1303847313 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
12 Hb_003540_240 0.1327074649 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
13 Hb_002988_040 0.1331406791 - - -
14 Hb_000861_020 0.1335472066 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
15 Hb_018133_090 0.1337393705 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011457_050 0.1338449549 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
17 Hb_002256_020 0.1343011785 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001049_110 0.1346556063 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_003020_220 0.1358427128 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
20 Hb_000614_160 0.1366064752 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001513_010 Hb_001513_010 Hb_011360_070 Hb_011360_070 Hb_001513_010--Hb_011360_070 Hb_004127_020 Hb_004127_020 Hb_001513_010--Hb_004127_020 Hb_000061_210 Hb_000061_210 Hb_001513_010--Hb_000061_210 Hb_000614_220 Hb_000614_220 Hb_001513_010--Hb_000614_220 Hb_000979_200 Hb_000979_200 Hb_001513_010--Hb_000979_200 Hb_023278_020 Hb_023278_020 Hb_001513_010--Hb_023278_020 Hb_000421_220 Hb_000421_220 Hb_011360_070--Hb_000421_220 Hb_002183_060 Hb_002183_060 Hb_011360_070--Hb_002183_060 Hb_003605_090 Hb_003605_090 Hb_011360_070--Hb_003605_090 Hb_003697_040 Hb_003697_040 Hb_011360_070--Hb_003697_040 Hb_008453_030 Hb_008453_030 Hb_011360_070--Hb_008453_030 Hb_011360_070--Hb_004127_020 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_103118_010 Hb_103118_010 Hb_000061_210--Hb_103118_010 Hb_000061_210--Hb_008453_030 Hb_002408_020 Hb_002408_020 Hb_000061_210--Hb_002408_020 Hb_012675_050 Hb_012675_050 Hb_000061_210--Hb_012675_050 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110 Hb_002799_110 Hb_002799_110 Hb_000614_220--Hb_002799_110 Hb_027654_060 Hb_027654_060 Hb_000614_220--Hb_027654_060 Hb_000614_160 Hb_000614_160 Hb_000614_220--Hb_000614_160 Hb_000510_290 Hb_000510_290 Hb_000614_220--Hb_000510_290 Hb_000614_220--Hb_012675_050 Hb_012114_070 Hb_012114_070 Hb_000614_220--Hb_012114_070 Hb_003581_100 Hb_003581_100 Hb_000979_200--Hb_003581_100 Hb_004586_170 Hb_004586_170 Hb_000979_200--Hb_004586_170 Hb_028486_030 Hb_028486_030 Hb_000979_200--Hb_028486_030 Hb_001246_060 Hb_001246_060 Hb_000979_200--Hb_001246_060 Hb_026549_040 Hb_026549_040 Hb_000979_200--Hb_026549_040 Hb_000979_200--Hb_012675_050 Hb_023278_020--Hb_004899_370 Hb_009615_070 Hb_009615_070 Hb_023278_020--Hb_009615_070 Hb_023278_020--Hb_004143_150 Hb_023278_020--Hb_004127_020 Hb_000001_060 Hb_000001_060 Hb_023278_020--Hb_000001_060 Hb_004889_010 Hb_004889_010 Hb_023278_020--Hb_004889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1381 9.24319 6.01251 12.1837 7.76311 16.2179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5948 34.323 17.5108 6.80424 24.7398

CAGE analysis