Hb_001246_060

Information

Type -
Description -
Location Contig1246: 43801-45615
Sequence    

Annotation

kegg
ID rcu:RCOM_0658800
description ATP binding protein, putative
nr
ID XP_002526500.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q46J69
description 10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL2A) GN=groS PE=3 SV=1
trembl
ID B9SKH0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0658800 PE=4 SV=1
Gene Ontology
ID GO:0009507
description 20 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07433: 43833-45532
cDNA
(Sanger)
(ID:Location)		 035_M22.ab1: 43885-45506

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_060 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001951_140 0.0613915157 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
3 Hb_001117_090 0.0833682258 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
4 Hb_002686_020 0.0854989422 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
5 Hb_002205_070 0.0897514028 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
6 Hb_001540_010 0.0909891596 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
7 Hb_026549_040 0.0910637309 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
8 Hb_003683_120 0.0924684514 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001292_020 0.0931595683 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
10 Hb_004048_110 0.0943471462 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
11 Hb_003050_080 0.0964458244 - - 40S ribosomal protein S14, putative [Ricinus communis]
12 Hb_007416_030 0.0969081289 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
13 Hb_002685_190 0.0971914704 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
14 Hb_118707_030 0.0974810995 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
15 Hb_143629_230 0.0979948109 - - ring finger, putative [Ricinus communis]
16 Hb_011781_030 0.1003455161 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
17 Hb_002942_190 0.1008821792 - - poly(A) polymerase, putative [Ricinus communis]
18 Hb_004645_050 0.1014394405 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
19 Hb_012725_050 0.1015605444 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
20 Hb_017904_010 0.1019149087 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001246_060 Hb_001246_060 Hb_001951_140 Hb_001951_140 Hb_001246_060--Hb_001951_140 Hb_001117_090 Hb_001117_090 Hb_001246_060--Hb_001117_090 Hb_002686_020 Hb_002686_020 Hb_001246_060--Hb_002686_020 Hb_002205_070 Hb_002205_070 Hb_001246_060--Hb_002205_070 Hb_001540_010 Hb_001540_010 Hb_001246_060--Hb_001540_010 Hb_026549_040 Hb_026549_040 Hb_001246_060--Hb_026549_040 Hb_002685_190 Hb_002685_190 Hb_001951_140--Hb_002685_190 Hb_000154_080 Hb_000154_080 Hb_001951_140--Hb_000154_080 Hb_001951_140--Hb_002686_020 Hb_004645_050 Hb_004645_050 Hb_001951_140--Hb_004645_050 Hb_000714_030 Hb_000714_030 Hb_001951_140--Hb_000714_030 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_003599_040 Hb_003599_040 Hb_001117_090--Hb_003599_040 Hb_000877_020 Hb_000877_020 Hb_001117_090--Hb_000877_020 Hb_000340_140 Hb_000340_140 Hb_001117_090--Hb_000340_140 Hb_009421_040 Hb_009421_040 Hb_001117_090--Hb_009421_040 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_118707_030 Hb_118707_030 Hb_002205_070--Hb_118707_030 Hb_000107_620 Hb_000107_620 Hb_002205_070--Hb_000107_620 Hb_009838_080 Hb_009838_080 Hb_002205_070--Hb_009838_080 Hb_000236_070 Hb_000236_070 Hb_002205_070--Hb_000236_070 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_001540_010--Hb_003050_080 Hb_001540_010--Hb_008878_030 Hb_004931_090 Hb_004931_090 Hb_001540_010--Hb_004931_090 Hb_005993_040 Hb_005993_040 Hb_001540_010--Hb_005993_040 Hb_000970_010 Hb_000970_010 Hb_001540_010--Hb_000970_010 Hb_002942_190 Hb_002942_190 Hb_026549_040--Hb_002942_190 Hb_001292_020 Hb_001292_020 Hb_026549_040--Hb_001292_020 Hb_000479_090 Hb_000479_090 Hb_026549_040--Hb_000479_090 Hb_026549_040--Hb_002686_020 Hb_000384_100 Hb_000384_100 Hb_026549_040--Hb_000384_100 Hb_012675_050 Hb_012675_050 Hb_026549_040--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6046 15.2197 17.9068 10.2511 40.9623 47.0076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.1814 89.2445 40.3334 16.4742 29.4542

CAGE analysis