Hb_000877_020

Information

Type -
Description -
Location Contig877: 65048-68235
Sequence    

Annotation

kegg
ID rcu:RCOM_0471210
description F-box/LRR-repeat protein, putative
nr
ID XP_012073066.1
description PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
swissprot
ID Q96IG2
description F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2
trembl
ID B9SMV8
description F-box/LRR-repeat protein, putative OS=Ricinus communis GN=RCOM_0471210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000877_020 0.0 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
2 Hb_094608_010 0.0765599908 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
3 Hb_001117_090 0.0797555645 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
4 Hb_000483_410 0.0846642445 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
5 Hb_024714_010 0.0927942393 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
6 Hb_012725_050 0.094499438 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
7 Hb_002214_040 0.0976971194 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
8 Hb_101705_030 0.097718907 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
9 Hb_000120_760 0.0996411704 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
10 Hb_009838_080 0.0996635374 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_002205_070 0.1007339321 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
12 Hb_004048_110 0.1008030906 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
13 Hb_004317_040 0.1014933109 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
14 Hb_005306_170 0.10191618 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
15 Hb_001821_010 0.1021138131 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
16 Hb_011781_030 0.1021491515 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
17 Hb_001246_060 0.1027493645 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001105_030 0.1028102849 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
19 Hb_001504_110 0.1030349325 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
20 Hb_139518_030 0.1049357128 - - protein kinase atn1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000877_020 Hb_000877_020 Hb_094608_010 Hb_094608_010 Hb_000877_020--Hb_094608_010 Hb_001117_090 Hb_001117_090 Hb_000877_020--Hb_001117_090 Hb_000483_410 Hb_000483_410 Hb_000877_020--Hb_000483_410 Hb_024714_010 Hb_024714_010 Hb_000877_020--Hb_024714_010 Hb_012725_050 Hb_012725_050 Hb_000877_020--Hb_012725_050 Hb_002214_040 Hb_002214_040 Hb_000877_020--Hb_002214_040 Hb_002830_020 Hb_002830_020 Hb_094608_010--Hb_002830_020 Hb_007576_170 Hb_007576_170 Hb_094608_010--Hb_007576_170 Hb_007012_060 Hb_007012_060 Hb_094608_010--Hb_007012_060 Hb_005181_030 Hb_005181_030 Hb_094608_010--Hb_005181_030 Hb_101705_030 Hb_101705_030 Hb_094608_010--Hb_101705_030 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_003599_040 Hb_003599_040 Hb_001117_090--Hb_003599_040 Hb_000340_140 Hb_000340_140 Hb_001117_090--Hb_000340_140 Hb_009421_040 Hb_009421_040 Hb_001117_090--Hb_009421_040 Hb_001246_060 Hb_001246_060 Hb_001117_090--Hb_001246_060 Hb_011781_030 Hb_011781_030 Hb_000483_410--Hb_011781_030 Hb_004317_040 Hb_004317_040 Hb_000483_410--Hb_004317_040 Hb_000680_140 Hb_000680_140 Hb_000483_410--Hb_000680_140 Hb_004108_230 Hb_004108_230 Hb_000483_410--Hb_004108_230 Hb_000483_410--Hb_094608_010 Hb_008554_070 Hb_008554_070 Hb_024714_010--Hb_008554_070 Hb_020000_010 Hb_020000_010 Hb_024714_010--Hb_020000_010 Hb_002016_120 Hb_002016_120 Hb_024714_010--Hb_002016_120 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_025240_040 Hb_025240_040 Hb_024714_010--Hb_025240_040 Hb_024185_020 Hb_024185_020 Hb_024714_010--Hb_024185_020 Hb_001105_030 Hb_001105_030 Hb_012725_050--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_012725_050--Hb_001157_020 Hb_001821_010 Hb_001821_010 Hb_012725_050--Hb_001821_010 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_000529_190 Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91805 0.631582 1.91685 0.911815 1.75161 3.59453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.94202 4.97879 2.96869 1.39808 1.76107

CAGE analysis