Hb_004055_170

Information

Type -
Description -
Location Contig4055: 118024-121694
Sequence    

Annotation

kegg
ID rcu:RCOM_0655640
description nucleosome assembly protein, putative
nr
ID XP_002521395.1
description nucleosome assembly protein, putative [Ricinus communis]
swissprot
ID Q9ZUP3
description Nucleosome assembly protein 1;2 OS=Arabidopsis thaliana GN=NAP1;2 PE=1 SV=1
trembl
ID B9S5X6
description Nucleosome assembly protein, putative OS=Ricinus communis GN=RCOM_0655640 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40226: 112255-117389 , PASA_asmbl_40230: 120309-120494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_170 0.0 - - nucleosome assembly protein, putative [Ricinus communis]
2 Hb_003935_020 0.1032230737 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_009659_050 0.1087312925 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
4 Hb_021576_040 0.1096170308 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002585_040 0.110132448 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
6 Hb_002234_140 0.1114083824 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
7 Hb_000487_210 0.1119106623 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
8 Hb_002112_020 0.1125500853 - - 60S ribosomal protein L9, putative [Ricinus communis]
9 Hb_011909_120 0.1134078458 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
10 Hb_000959_210 0.1140842312 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
11 Hb_014109_040 0.1144674297 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
12 Hb_002461_060 0.1154937075 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
13 Hb_002253_100 0.1178337853 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
14 Hb_000107_190 0.1196175728 - - 50S ribosomal protein L20 [Hevea brasiliensis]
15 Hb_002175_030 0.1202205221 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
16 Hb_000334_280 0.1206040058 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
17 Hb_007451_010 0.1211762124 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
18 Hb_000836_170 0.1219035711 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
19 Hb_004122_040 0.1221273769 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
20 Hb_000126_010 0.1230094146 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004055_170 Hb_004055_170 Hb_003935_020 Hb_003935_020 Hb_004055_170--Hb_003935_020 Hb_009659_050 Hb_009659_050 Hb_004055_170--Hb_009659_050 Hb_021576_040 Hb_021576_040 Hb_004055_170--Hb_021576_040 Hb_002585_040 Hb_002585_040 Hb_004055_170--Hb_002585_040 Hb_002234_140 Hb_002234_140 Hb_004055_170--Hb_002234_140 Hb_000487_210 Hb_000487_210 Hb_004055_170--Hb_000487_210 Hb_000959_210 Hb_000959_210 Hb_003935_020--Hb_000959_210 Hb_014109_040 Hb_014109_040 Hb_003935_020--Hb_014109_040 Hb_004093_090 Hb_004093_090 Hb_003935_020--Hb_004093_090 Hb_004032_430 Hb_004032_430 Hb_003935_020--Hb_004032_430 Hb_120410_010 Hb_120410_010 Hb_003935_020--Hb_120410_010 Hb_002652_030 Hb_002652_030 Hb_003935_020--Hb_002652_030 Hb_002217_110 Hb_002217_110 Hb_009659_050--Hb_002217_110 Hb_001227_030 Hb_001227_030 Hb_009659_050--Hb_001227_030 Hb_004837_180 Hb_004837_180 Hb_009659_050--Hb_004837_180 Hb_000260_680 Hb_000260_680 Hb_009659_050--Hb_000260_680 Hb_000329_590 Hb_000329_590 Hb_009659_050--Hb_000329_590 Hb_004236_050 Hb_004236_050 Hb_009659_050--Hb_004236_050 Hb_021576_040--Hb_002234_140 Hb_002296_050 Hb_002296_050 Hb_021576_040--Hb_002296_050 Hb_000009_530 Hb_000009_530 Hb_021576_040--Hb_000009_530 Hb_000144_100 Hb_000144_100 Hb_021576_040--Hb_000144_100 Hb_000610_010 Hb_000610_010 Hb_021576_040--Hb_000610_010 Hb_000710_010 Hb_000710_010 Hb_021576_040--Hb_000710_010 Hb_007576_080 Hb_007576_080 Hb_002585_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_002585_040--Hb_000487_210 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002585_040--Hb_002296_050 Hb_002585_040--Hb_004032_430 Hb_001504_020 Hb_001504_020 Hb_002234_140--Hb_001504_020 Hb_000444_080 Hb_000444_080 Hb_002234_140--Hb_000444_080 Hb_002234_140--Hb_000563_230 Hb_002234_140--Hb_003935_020 Hb_002234_140--Hb_000009_530 Hb_012753_170 Hb_012753_170 Hb_000487_210--Hb_012753_170 Hb_000979_170 Hb_000979_170 Hb_000487_210--Hb_000979_170 Hb_000679_310 Hb_000679_310 Hb_000487_210--Hb_000679_310 Hb_004970_090 Hb_004970_090 Hb_000487_210--Hb_004970_090 Hb_033834_030 Hb_033834_030 Hb_000487_210--Hb_033834_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.21626 4.66201 5.60875 3.67939 4.08964 5.86989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.72505 10.0759 1.42461 5.24186 3.58205

CAGE analysis