Hb_000723_040

Information

Type -
Description -
Location Contig723: 55142-62066
Sequence    

Annotation

kegg
ID rcu:RCOM_1354890
description histidyl-tRNA synthetase, putative (EC:6.1.1.21)
nr
ID XP_012082424.1
description PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID B1ZUW6
description Histidine--tRNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=hisS PE=3 SV=1
trembl
ID A0A067JZ42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16551 PE=3 SV=1
Gene Ontology
ID GO:0005737
description histidine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55748: 55186-61830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_040 0.0 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_022693_140 0.0831906729 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
3 Hb_004330_090 0.0914201947 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
4 Hb_013607_030 0.0927396004 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
5 Hb_012022_150 0.0950826291 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
6 Hb_000137_040 0.0952984065 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
7 Hb_002163_040 0.1027009608 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002780_020 0.1029512178 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
9 Hb_002154_100 0.1048441758 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
10 Hb_001014_160 0.1070057685 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
11 Hb_008642_040 0.1071306523 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
12 Hb_003513_010 0.1080480591 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
13 Hb_002758_010 0.1091479604 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
14 Hb_000075_040 0.1101794152 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
15 Hb_000224_160 0.1109028755 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_004310_140 0.1109623324 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
17 Hb_003440_060 0.1119113369 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
18 Hb_000804_040 0.1125319323 - - protein with unknown function [Ricinus communis]
19 Hb_029879_010 0.1126272505 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
20 Hb_012055_030 0.1137867156 - - Protein FRIGIDA, putative [Ricinus communis]

Gene co-expression network

sample Hb_000723_040 Hb_000723_040 Hb_022693_140 Hb_022693_140 Hb_000723_040--Hb_022693_140 Hb_004330_090 Hb_004330_090 Hb_000723_040--Hb_004330_090 Hb_013607_030 Hb_013607_030 Hb_000723_040--Hb_013607_030 Hb_012022_150 Hb_012022_150 Hb_000723_040--Hb_012022_150 Hb_000137_040 Hb_000137_040 Hb_000723_040--Hb_000137_040 Hb_002163_040 Hb_002163_040 Hb_000723_040--Hb_002163_040 Hb_022693_140--Hb_012022_150 Hb_000804_040 Hb_000804_040 Hb_022693_140--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_022693_140--Hb_000224_160 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_022693_140--Hb_000137_040 Hb_002553_060 Hb_002553_060 Hb_004330_090--Hb_002553_060 Hb_004330_090--Hb_000137_040 Hb_001021_150 Hb_001021_150 Hb_004330_090--Hb_001021_150 Hb_000227_170 Hb_000227_170 Hb_004330_090--Hb_000227_170 Hb_000676_120 Hb_000676_120 Hb_004330_090--Hb_000676_120 Hb_189216_020 Hb_189216_020 Hb_004330_090--Hb_189216_020 Hb_027295_050 Hb_027295_050 Hb_013607_030--Hb_027295_050 Hb_004100_080 Hb_004100_080 Hb_013607_030--Hb_004100_080 Hb_006502_090 Hb_006502_090 Hb_013607_030--Hb_006502_090 Hb_000317_050 Hb_000317_050 Hb_013607_030--Hb_000317_050 Hb_002013_020 Hb_002013_020 Hb_013607_030--Hb_002013_020 Hb_002154_100 Hb_002154_100 Hb_013607_030--Hb_002154_100 Hb_012022_150--Hb_000224_160 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_003513_010 Hb_003513_010 Hb_000137_040--Hb_003513_010 Hb_000137_040--Hb_002013_020 Hb_005496_140 Hb_005496_140 Hb_000137_040--Hb_005496_140 Hb_001322_110 Hb_001322_110 Hb_000137_040--Hb_001322_110 Hb_003416_010 Hb_003416_010 Hb_000137_040--Hb_003416_010 Hb_000866_260 Hb_000866_260 Hb_000137_040--Hb_000866_260 Hb_000080_120 Hb_000080_120 Hb_002163_040--Hb_000080_120 Hb_002163_040--Hb_000224_160 Hb_006117_040 Hb_006117_040 Hb_002163_040--Hb_006117_040 Hb_001584_200 Hb_001584_200 Hb_002163_040--Hb_001584_200 Hb_002163_040--Hb_022693_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2875 9.41688 20.1129 9.19692 14.3724 21.8243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.934 27.5767 11.1847 14.1366 28.5383

CAGE analysis