Hb_000676_120

Information

Type -
Description -
Location Contig676: 70503-78912
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53547: 70490-78962
cDNA
(Sanger)
(ID:Location)		 053_B17.ab1: 70494-75729

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_120 0.0 - - -
2 Hb_008616_050 0.0656724145 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
3 Hb_002553_060 0.0718534233 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
4 Hb_004545_110 0.0760221968 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
5 Hb_027380_060 0.0770065232 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
6 Hb_001318_280 0.0799827465 - - Protein FAM18B, putative [Ricinus communis]
7 Hb_001232_190 0.0841577508 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
8 Hb_009898_050 0.0846200719 - - PREDICTED: beta-taxilin [Jatropha curcas]
9 Hb_121729_010 0.0867716925 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000347_240 0.0885481427 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
11 Hb_004330_090 0.0888764911 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
12 Hb_002641_060 0.0918951476 - - prefoldin subunit, putative [Ricinus communis]
13 Hb_001828_150 0.0927351622 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
14 Hb_000666_100 0.0928120457 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
15 Hb_000905_110 0.0938171272 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
16 Hb_009328_020 0.0945837462 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000181_130 0.094784443 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000260_630 0.095793764 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
19 Hb_006573_190 0.0969909617 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
20 Hb_008847_030 0.0975513522 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_120 Hb_000676_120 Hb_008616_050 Hb_008616_050 Hb_000676_120--Hb_008616_050 Hb_002553_060 Hb_002553_060 Hb_000676_120--Hb_002553_060 Hb_004545_110 Hb_004545_110 Hb_000676_120--Hb_004545_110 Hb_027380_060 Hb_027380_060 Hb_000676_120--Hb_027380_060 Hb_001318_280 Hb_001318_280 Hb_000676_120--Hb_001318_280 Hb_001232_190 Hb_001232_190 Hb_000676_120--Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_002641_060 Hb_002641_060 Hb_008616_050--Hb_002641_060 Hb_008616_050--Hb_004545_110 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_008616_050--Hb_001318_280 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_001946_400 Hb_001946_400 Hb_002553_060--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_002553_060--Hb_001021_150 Hb_002553_060--Hb_001318_280 Hb_002553_060--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_002553_060--Hb_000976_120 Hb_189216_020 Hb_189216_020 Hb_002553_060--Hb_189216_020 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_133702_010 Hb_133702_010 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_027380_060--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_027380_060--Hb_013575_010 Hb_027380_060--Hb_008616_050 Hb_000058_130 Hb_000058_130 Hb_027380_060--Hb_000058_130 Hb_027380_060--Hb_001232_190 Hb_172632_100 Hb_172632_100 Hb_001318_280--Hb_172632_100 Hb_003994_230 Hb_003994_230 Hb_001318_280--Hb_003994_230 Hb_000081_160 Hb_000081_160 Hb_001318_280--Hb_000081_160 Hb_001318_280--Hb_002641_060 Hb_000579_120 Hb_000579_120 Hb_001232_190--Hb_000579_120 Hb_109000_020 Hb_109000_020 Hb_001232_190--Hb_109000_020 Hb_001232_190--Hb_002641_060 Hb_001232_190--Hb_000058_130 Hb_000207_150 Hb_000207_150 Hb_001232_190--Hb_000207_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18496 3.023 9.5853 10.7963 10.0116 7.27965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.4068 11.3651 6.96537 8.86503 9.95148

CAGE analysis