Hb_027380_060

Information

Type -
Description -
Location Contig27380: 32722-39508
Sequence    

Annotation

kegg
ID rcu:RCOM_0229930
description hypothetical protein
nr
ID XP_012072151.1
description PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
swissprot
ID Q67YS6
description Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1
trembl
ID A0A067L1M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04647 PE=4 SV=1
Gene Ontology
ID GO:0016020
description ala-interacting subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28590: 32707-39505 , PASA_asmbl_28591: 32707-39417 , PASA_asmbl_28592: 33711-34044 , PASA_asmbl_28593: 38616-38869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_060 0.0 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
2 Hb_002641_060 0.0703494474 - - prefoldin subunit, putative [Ricinus communis]
3 Hb_013575_010 0.070877353 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
4 Hb_008616_050 0.0732501315 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
5 Hb_000058_130 0.076814745 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
6 Hb_000676_120 0.0770065232 - - -
7 Hb_001232_190 0.0785302272 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
8 Hb_003416_010 0.0813761613 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
9 Hb_009898_050 0.0813882843 - - PREDICTED: beta-taxilin [Jatropha curcas]
10 Hb_004627_040 0.0820884657 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
11 Hb_000579_120 0.0824546408 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
12 Hb_002681_100 0.0833367349 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
13 Hb_021419_030 0.0842932661 - - hypothetical protein glysoja_023295 [Glycine soja]
14 Hb_000905_110 0.0843063234 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
15 Hb_000336_210 0.0845582332 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
16 Hb_000976_120 0.084731467 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
17 Hb_003057_060 0.0850021659 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002553_060 0.0864315742 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
19 Hb_001188_070 0.0864776015 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
20 Hb_000006_010 0.0875807091 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027380_060 Hb_027380_060 Hb_002641_060 Hb_002641_060 Hb_027380_060--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_027380_060--Hb_013575_010 Hb_008616_050 Hb_008616_050 Hb_027380_060--Hb_008616_050 Hb_000058_130 Hb_000058_130 Hb_027380_060--Hb_000058_130 Hb_000676_120 Hb_000676_120 Hb_027380_060--Hb_000676_120 Hb_001232_190 Hb_001232_190 Hb_027380_060--Hb_001232_190 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_013575_010--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_008616_050--Hb_001232_190 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_001318_280 Hb_001318_280 Hb_008616_050--Hb_001318_280 Hb_008616_050--Hb_008847_030 Hb_000579_120 Hb_000579_120 Hb_000058_130--Hb_000579_120 Hb_000207_150 Hb_000207_150 Hb_000058_130--Hb_000207_150 Hb_002157_120 Hb_002157_120 Hb_000058_130--Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_000058_130--Hb_000028_520 Hb_000058_130--Hb_001232_190 Hb_002874_180 Hb_002874_180 Hb_000058_130--Hb_002874_180 Hb_000676_120--Hb_008616_050 Hb_002553_060 Hb_002553_060 Hb_000676_120--Hb_002553_060 Hb_000676_120--Hb_004545_110 Hb_000676_120--Hb_001318_280 Hb_000676_120--Hb_001232_190 Hb_001232_190--Hb_000579_120 Hb_109000_020 Hb_109000_020 Hb_001232_190--Hb_109000_020 Hb_001232_190--Hb_002641_060 Hb_001232_190--Hb_000207_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.32666 6.5391 16.2351 17.8029 16.7039 11.182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3491 15.3561 12.6324 9.56576 13.1766

CAGE analysis