Hb_003398_020

Information

Type -
Description -
Location Contig3398: 35553-35903
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05800g
description POPTRDRAFT_563919; hypothetical protein
nr
ID XP_012088921.1
description PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01433 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_020 0.0 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
2 Hb_000239_110 0.147495128 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
3 Hb_003376_380 0.1563146357 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
4 Hb_004429_110 0.1744651374 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
5 Hb_007313_080 0.1749788128 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
6 Hb_002900_130 0.1761251581 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
7 Hb_001449_100 0.1771203041 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
8 Hb_003540_200 0.1834449097 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
9 Hb_001266_030 0.1851572538 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
10 Hb_003057_020 0.1916187625 - - 40S ribosomal protein S23, putative [Ricinus communis]
11 Hb_100180_010 0.1937314064 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
12 Hb_005054_040 0.1942623462 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
13 Hb_154141_030 0.195776882 - - PREDICTED: histone H2AX [Populus euphratica]
14 Hb_000454_180 0.1976036026 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
15 Hb_011609_110 0.1992862051 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
16 Hb_014497_080 0.1996486737 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
17 Hb_028271_020 0.199876983 - - acyl-CoA oxidase, putative [Ricinus communis]
18 Hb_001016_080 0.2016416723 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
19 Hb_042871_010 0.2016480613 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
20 Hb_004679_060 0.2033226657 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003398_020 Hb_003398_020 Hb_000239_110 Hb_000239_110 Hb_003398_020--Hb_000239_110 Hb_003376_380 Hb_003376_380 Hb_003398_020--Hb_003376_380 Hb_004429_110 Hb_004429_110 Hb_003398_020--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_003398_020--Hb_007313_080 Hb_002900_130 Hb_002900_130 Hb_003398_020--Hb_002900_130 Hb_001449_100 Hb_001449_100 Hb_003398_020--Hb_001449_100 Hb_005725_100 Hb_005725_100 Hb_000239_110--Hb_005725_100 Hb_042871_010 Hb_042871_010 Hb_000239_110--Hb_042871_010 Hb_000239_110--Hb_003376_380 Hb_000239_110--Hb_004429_110 Hb_000500_210 Hb_000500_210 Hb_000239_110--Hb_000500_210 Hb_003057_020 Hb_003057_020 Hb_003376_380--Hb_003057_020 Hb_003376_380--Hb_002900_130 Hb_003376_380--Hb_001449_100 Hb_001623_070 Hb_001623_070 Hb_003376_380--Hb_001623_070 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_000768_130 Hb_000768_130 Hb_007313_080--Hb_000768_130 Hb_003020_330 Hb_003020_330 Hb_007313_080--Hb_003020_330 Hb_007313_080--Hb_000454_180 Hb_007313_080--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_007313_080--Hb_154141_030 Hb_027472_160 Hb_027472_160 Hb_007313_080--Hb_027472_160 Hb_002900_130--Hb_154141_030 Hb_002900_130--Hb_000768_130 Hb_001635_130 Hb_001635_130 Hb_002900_130--Hb_001635_130 Hb_002900_130--Hb_003020_330 Hb_000739_140 Hb_000739_140 Hb_002900_130--Hb_000739_140 Hb_028271_020 Hb_028271_020 Hb_001449_100--Hb_028271_020 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_002784_100 Hb_002784_100 Hb_001449_100--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_001449_100--Hb_011609_110 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32694 1.00608 2.72595 4.99248 0 0.906083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.27473 31.0359 2.80854 5.88012 1.02383

CAGE analysis