Hb_000500_210

Information

Type -
Description -
Location Contig500: 146890-149571
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45750: 147702-149394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_210 0.0 - - -
2 Hb_011224_040 0.1484417309 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
3 Hb_004429_110 0.1550844847 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
4 Hb_000454_180 0.1555249711 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
5 Hb_008887_040 0.1702875026 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
6 Hb_007943_140 0.1742955124 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
7 Hb_004755_030 0.1750924462 - - EG964 [Manihot glaziovii]
8 Hb_182005_010 0.177735894 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
9 Hb_000617_110 0.1828928401 - - translationally controlled tumor protein [Hevea brasiliensis]
10 Hb_021924_010 0.1840617454 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
11 Hb_000172_420 0.1880126083 - - 60S ribosomal protein L30, putative [Ricinus communis]
12 Hb_001488_400 0.1917927278 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
13 Hb_000270_720 0.1923314098 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
14 Hb_002248_100 0.1925930302 - - hypothetical protein VITISV_027197 [Vitis vinifera]
15 Hb_004735_050 0.1930716789 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_005725_100 0.1944043157 - - hypothetical protein 30 [Hevea brasiliensis]
17 Hb_000599_280 0.1945142443 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
18 Hb_000159_070 0.1955982263 - - JHL03K20.4 [Jatropha curcas]
19 Hb_000853_240 0.1962989693 - - -
20 Hb_148909_020 0.1964906276 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000500_210 Hb_000500_210 Hb_011224_040 Hb_011224_040 Hb_000500_210--Hb_011224_040 Hb_004429_110 Hb_004429_110 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030 Hb_000046_200 Hb_000046_200 Hb_011224_040--Hb_000046_200 Hb_002526_020 Hb_002526_020 Hb_011224_040--Hb_002526_020 Hb_000434_020 Hb_000434_020 Hb_011224_040--Hb_000434_020 Hb_011224_040--Hb_004429_110 Hb_000975_270 Hb_000975_270 Hb_011224_040--Hb_000975_270 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_000599_280 Hb_000599_280 Hb_000454_180--Hb_000599_280 Hb_003057_020 Hb_003057_020 Hb_000454_180--Hb_003057_020 Hb_000454_180--Hb_006588_080 Hb_007313_080 Hb_007313_080 Hb_000454_180--Hb_007313_080 Hb_011377_020 Hb_011377_020 Hb_000454_180--Hb_011377_020 Hb_007120_090 Hb_007120_090 Hb_000454_180--Hb_007120_090 Hb_000270_720 Hb_000270_720 Hb_008887_040--Hb_000270_720 Hb_008887_040--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_008887_040--Hb_000789_110 Hb_000159_070 Hb_000159_070 Hb_008887_040--Hb_000159_070 Hb_168711_010 Hb_168711_010 Hb_008887_040--Hb_168711_010 Hb_002260_020 Hb_002260_020 Hb_008887_040--Hb_002260_020 Hb_002248_100 Hb_002248_100 Hb_007943_140--Hb_002248_100 Hb_000963_030 Hb_000963_030 Hb_007943_140--Hb_000963_030 Hb_001017_070 Hb_001017_070 Hb_007943_140--Hb_001017_070 Hb_000172_420 Hb_000172_420 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010 Hb_004755_030--Hb_000270_720 Hb_004755_030--Hb_000789_110 Hb_004007_180 Hb_004007_180 Hb_004755_030--Hb_004007_180 Hb_002316_120 Hb_002316_120 Hb_004755_030--Hb_002316_120 Hb_000975_180 Hb_000975_180 Hb_004755_030--Hb_000975_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37335 1.0435 0.775868 2.11072 0.492714 1.16912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1039 18.19 0.791081 1.26514 0.877709

CAGE analysis