Hb_000434_020

Information

Type -
Description -
Location Contig434: 16616-19774
Sequence    

Annotation

kegg
ID tcc:TCM_031606
description Yippee family zinc-binding protein, putative isoform 1
nr
ID XP_012076369.1
description PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
swissprot
ID Q9FN32
description Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1
trembl
ID A0A067LBU7
description Protein yippee-like OS=Jatropha curcas GN=JCGZ_15311 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42411: 18273-18603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000434_020 0.0 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
2 Hb_011224_040 0.1993156964 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
3 Hb_000500_210 0.2046494034 - - -
4 Hb_002526_020 0.2215955137 - - -
5 Hb_065866_010 0.2224568426 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
6 Hb_002759_110 0.2315103886 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
7 Hb_187024_070 0.2467255921 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
8 Hb_000270_610 0.2525488565 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
9 Hb_000046_200 0.2560687823 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
10 Hb_003376_380 0.2564679828 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
11 Hb_148909_020 0.2590214717 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_003124_140 0.2625765989 - - hypothetical protein Csa_4G182240 [Cucumis sativus]
13 Hb_000454_180 0.2646748872 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
14 Hb_003784_050 0.2647473486 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
15 Hb_008887_040 0.264766529 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
16 Hb_060618_010 0.2662611683 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_004429_110 0.2688750108 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
18 Hb_007765_120 0.2692874661 - - glycogen phosphorylase, putative [Ricinus communis]
19 Hb_000599_280 0.271272754 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
20 Hb_001140_240 0.2717278976 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000434_020 Hb_000434_020 Hb_011224_040 Hb_011224_040 Hb_000434_020--Hb_011224_040 Hb_000500_210 Hb_000500_210 Hb_000434_020--Hb_000500_210 Hb_002526_020 Hb_002526_020 Hb_000434_020--Hb_002526_020 Hb_065866_010 Hb_065866_010 Hb_000434_020--Hb_065866_010 Hb_002759_110 Hb_002759_110 Hb_000434_020--Hb_002759_110 Hb_187024_070 Hb_187024_070 Hb_000434_020--Hb_187024_070 Hb_011224_040--Hb_000500_210 Hb_000046_200 Hb_000046_200 Hb_011224_040--Hb_000046_200 Hb_011224_040--Hb_002526_020 Hb_004429_110 Hb_004429_110 Hb_011224_040--Hb_004429_110 Hb_000975_270 Hb_000975_270 Hb_011224_040--Hb_000975_270 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030 Hb_003784_050 Hb_003784_050 Hb_002526_020--Hb_003784_050 Hb_100180_010 Hb_100180_010 Hb_002526_020--Hb_100180_010 Hb_003376_380 Hb_003376_380 Hb_002526_020--Hb_003376_380 Hb_002526_020--Hb_000500_210 Hb_007290_080 Hb_007290_080 Hb_065866_010--Hb_007290_080 Hb_148909_020 Hb_148909_020 Hb_065866_010--Hb_148909_020 Hb_133702_040 Hb_133702_040 Hb_065866_010--Hb_133702_040 Hb_000836_140 Hb_000836_140 Hb_065866_010--Hb_000836_140 Hb_060618_010 Hb_060618_010 Hb_065866_010--Hb_060618_010 Hb_000270_610 Hb_000270_610 Hb_002759_110--Hb_000270_610 Hb_001823_060 Hb_001823_060 Hb_002759_110--Hb_001823_060 Hb_000175_190 Hb_000175_190 Hb_002759_110--Hb_000175_190 Hb_005144_070 Hb_005144_070 Hb_002759_110--Hb_005144_070 Hb_000577_090 Hb_000577_090 Hb_002759_110--Hb_000577_090 Hb_000111_100 Hb_000111_100 Hb_002759_110--Hb_000111_100 Hb_000738_010 Hb_000738_010 Hb_187024_070--Hb_000738_010 Hb_187024_070--Hb_000046_200 Hb_001379_130 Hb_001379_130 Hb_187024_070--Hb_001379_130 Hb_012324_020 Hb_012324_020 Hb_187024_070--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_187024_070--Hb_094721_010 Hb_000003_770 Hb_000003_770 Hb_187024_070--Hb_000003_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.519434 0.574622 0.317576 1.75751 0.398715 1.3326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6113 17.9213 0 1.55305 4.43736

CAGE analysis