Hb_187024_070

Information

Type -
Description -
Location Contig187024: 133282-141153
Sequence    

Annotation

kegg
ID mus:103995568
description uncharacterized protein LOC103995568 isoform X1
nr
ID XP_012466995.1
description PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187024_070 0.0 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
2 Hb_000738_010 0.1229802948 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_000046_200 0.234149126 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
4 Hb_001379_130 0.2350900274 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
5 Hb_012324_020 0.2368047253 - - -
6 Hb_094721_010 0.2380391118 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
7 Hb_000003_770 0.239080852 - - -
8 Hb_000434_020 0.2467255921 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
9 Hb_000915_100 0.2492975337 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
10 Hb_002636_020 0.2680756321 - - -
11 Hb_001842_120 0.270092874 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_003837_020 0.2715807367 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
13 Hb_000067_020 0.2731360404 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
14 Hb_008092_140 0.2759585491 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
15 Hb_011224_040 0.2764175991 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
16 Hb_005408_040 0.2777036479 - - -
17 Hb_088496_010 0.2797280867 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
18 Hb_039305_010 0.2842253427 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
19 Hb_003773_030 0.2870191606 - - -
20 Hb_186158_010 0.2881898507 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_187024_070 Hb_187024_070 Hb_000738_010 Hb_000738_010 Hb_187024_070--Hb_000738_010 Hb_000046_200 Hb_000046_200 Hb_187024_070--Hb_000046_200 Hb_001379_130 Hb_001379_130 Hb_187024_070--Hb_001379_130 Hb_012324_020 Hb_012324_020 Hb_187024_070--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_187024_070--Hb_094721_010 Hb_000003_770 Hb_000003_770 Hb_187024_070--Hb_000003_770 Hb_000738_010--Hb_012324_020 Hb_000738_010--Hb_094721_010 Hb_000738_010--Hb_000003_770 Hb_002636_020 Hb_002636_020 Hb_000738_010--Hb_002636_020 Hb_000738_010--Hb_001379_130 Hb_011224_040 Hb_011224_040 Hb_000046_200--Hb_011224_040 Hb_000915_100 Hb_000915_100 Hb_000046_200--Hb_000915_100 Hb_001842_120 Hb_001842_120 Hb_000046_200--Hb_001842_120 Hb_000500_210 Hb_000500_210 Hb_000046_200--Hb_000500_210 Hb_000975_270 Hb_000975_270 Hb_000046_200--Hb_000975_270 Hb_001425_110 Hb_001425_110 Hb_000046_200--Hb_001425_110 Hb_001379_130--Hb_000003_770 Hb_001257_020 Hb_001257_020 Hb_001379_130--Hb_001257_020 Hb_088496_010 Hb_088496_010 Hb_001379_130--Hb_088496_010 Hb_001379_130--Hb_012324_020 Hb_001379_130--Hb_094721_010 Hb_004297_030 Hb_004297_030 Hb_001379_130--Hb_004297_030 Hb_012324_020--Hb_094721_010 Hb_012324_020--Hb_000003_770 Hb_012324_020--Hb_088496_010 Hb_012324_020--Hb_004297_030 Hb_005408_040 Hb_005408_040 Hb_012324_020--Hb_005408_040 Hb_094721_010--Hb_000003_770 Hb_094721_010--Hb_088496_010 Hb_094721_010--Hb_004297_030 Hb_094721_010--Hb_005408_040 Hb_000003_770--Hb_088496_010 Hb_000003_770--Hb_001257_020 Hb_000003_770--Hb_004297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0136089 0 0.0751595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.326845 0.417788 0 0 0.0664885

CAGE analysis