Hb_005408_040

Information

Type -
Description -
Location Contig5408: 44275-45989
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005408_040 0.0 - - -
2 Hb_012324_020 0.174394287 - - -
3 Hb_094721_010 0.1751436326 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
4 Hb_000395_060 0.186540752 - - -
5 Hb_000107_640 0.2088593998 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000003_770 0.2163439958 - - -
7 Hb_001379_130 0.2202592023 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
8 Hb_088496_010 0.2376746178 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
9 Hb_145890_010 0.2481451453 - - unnamed protein product [Vitis vinifera]
10 Hb_004297_030 0.2511284585 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
11 Hb_000979_050 0.2550045971 - - -
12 Hb_000804_030 0.2563113612 - - Protein C14orf111, putative [Ricinus communis]
13 Hb_001348_110 0.2591457949 - - PREDICTED: esterase-like [Jatropha curcas]
14 Hb_008954_010 0.263783359 - - -
15 Hb_003837_020 0.2648806039 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
16 Hb_005063_070 0.2689448762 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
17 Hb_175572_010 0.2698262672 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_001842_120 0.2726388542 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
19 Hb_039305_010 0.2728429495 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
20 Hb_005009_020 0.273536281 - - -

Gene co-expression network

sample Hb_005408_040 Hb_005408_040 Hb_012324_020 Hb_012324_020 Hb_005408_040--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_005408_040--Hb_094721_010 Hb_000395_060 Hb_000395_060 Hb_005408_040--Hb_000395_060 Hb_000107_640 Hb_000107_640 Hb_005408_040--Hb_000107_640 Hb_000003_770 Hb_000003_770 Hb_005408_040--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_005408_040--Hb_001379_130 Hb_012324_020--Hb_094721_010 Hb_012324_020--Hb_000003_770 Hb_088496_010 Hb_088496_010 Hb_012324_020--Hb_088496_010 Hb_012324_020--Hb_001379_130 Hb_004297_030 Hb_004297_030 Hb_012324_020--Hb_004297_030 Hb_094721_010--Hb_000003_770 Hb_094721_010--Hb_088496_010 Hb_094721_010--Hb_004297_030 Hb_094721_010--Hb_001379_130 Hb_000395_060--Hb_000107_640 Hb_175572_010 Hb_175572_010 Hb_000395_060--Hb_175572_010 Hb_001959_300 Hb_001959_300 Hb_000395_060--Hb_001959_300 Hb_009954_050 Hb_009954_050 Hb_000395_060--Hb_009954_050 Hb_005009_020 Hb_005009_020 Hb_000395_060--Hb_005009_020 Hb_000107_640--Hb_175572_010 Hb_003116_020 Hb_003116_020 Hb_000107_640--Hb_003116_020 Hb_005063_070 Hb_005063_070 Hb_000107_640--Hb_005063_070 Hb_000107_640--Hb_005009_020 Hb_000003_770--Hb_001379_130 Hb_000003_770--Hb_088496_010 Hb_001257_020 Hb_001257_020 Hb_000003_770--Hb_001257_020 Hb_000003_770--Hb_004297_030 Hb_001379_130--Hb_001257_020 Hb_001379_130--Hb_088496_010 Hb_001379_130--Hb_004297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.222786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.571891 0.899247 0 0.101165 0

CAGE analysis