Hb_005063_070

Information

Type -
Description -
Location Contig5063: 74826-75367
Sequence    

Annotation

kegg
ID rcu:RCOM_0992250
description hypothetical protein
nr
ID XP_012089279.1
description PREDICTED: PRA1 family protein E [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S4T5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0992250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46145: 76150-77221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005063_070 0.0 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
2 Hb_001951_280 0.2044351383 - - -
3 Hb_063511_010 0.2265787134 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
4 Hb_157340_010 0.2275425613 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
5 Hb_000107_640 0.2282432445 - - conserved hypothetical protein [Ricinus communis]
6 Hb_015091_010 0.2446605883 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_000348_040 0.2461442094 - - -
8 Hb_006501_030 0.2673078095 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
9 Hb_005408_040 0.2689448762 - - -
10 Hb_003116_020 0.2793422333 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
11 Hb_011344_180 0.2793775958 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
12 Hb_004297_030 0.2848998389 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
13 Hb_005595_020 0.2860121056 - - -
14 Hb_094721_010 0.2908185597 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
15 Hb_000832_240 0.2912338221 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012324_020 0.2931951824 - - -
17 Hb_000563_270 0.294697229 - - -
18 Hb_088496_010 0.3005988588 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
19 Hb_007574_060 0.3009399528 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
20 Hb_000367_170 0.3017594998 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005063_070 Hb_005063_070 Hb_001951_280 Hb_001951_280 Hb_005063_070--Hb_001951_280 Hb_063511_010 Hb_063511_010 Hb_005063_070--Hb_063511_010 Hb_157340_010 Hb_157340_010 Hb_005063_070--Hb_157340_010 Hb_000107_640 Hb_000107_640 Hb_005063_070--Hb_000107_640 Hb_015091_010 Hb_015091_010 Hb_005063_070--Hb_015091_010 Hb_000348_040 Hb_000348_040 Hb_005063_070--Hb_000348_040 Hb_001951_280--Hb_063511_010 Hb_001951_280--Hb_015091_010 Hb_169488_010 Hb_169488_010 Hb_001951_280--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_001951_280--Hb_003702_050 Hb_001951_280--Hb_000348_040 Hb_063511_010--Hb_015091_010 Hb_063511_010--Hb_169488_010 Hb_063511_010--Hb_003702_050 Hb_063511_010--Hb_000348_040 Hb_006501_030 Hb_006501_030 Hb_063511_010--Hb_006501_030 Hb_005595_020 Hb_005595_020 Hb_157340_010--Hb_005595_020 Hb_157340_010--Hb_169488_010 Hb_002365_010 Hb_002365_010 Hb_157340_010--Hb_002365_010 Hb_157340_010--Hb_003702_050 Hb_069868_010 Hb_069868_010 Hb_157340_010--Hb_069868_010 Hb_175572_010 Hb_175572_010 Hb_000107_640--Hb_175572_010 Hb_003116_020 Hb_003116_020 Hb_000107_640--Hb_003116_020 Hb_000395_060 Hb_000395_060 Hb_000107_640--Hb_000395_060 Hb_005408_040 Hb_005408_040 Hb_000107_640--Hb_005408_040 Hb_005009_020 Hb_005009_020 Hb_000107_640--Hb_005009_020 Hb_004297_030 Hb_004297_030 Hb_015091_010--Hb_004297_030 Hb_015091_010--Hb_000348_040 Hb_088496_010 Hb_088496_010 Hb_015091_010--Hb_088496_010 Hb_015091_010--Hb_006501_030 Hb_000348_040--Hb_006501_030 Hb_000348_040--Hb_004297_030 Hb_000348_040--Hb_088496_010 Hb_000048_100 Hb_000048_100 Hb_000348_040--Hb_000048_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.748014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324615 0.766208 0 0.117081 0

CAGE analysis