Hb_157340_010

Information

Type -
Description -
Location Contig157340: 621-1307
Sequence    

Annotation

kegg
ID rcu:RCOM_0964720
description polyamine oxidase, putative (EC:1.5.3.11)
nr
ID KDO83342.1
description hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067H6L8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0109951mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description polyamine oxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157340_010 0.0 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
2 Hb_005595_020 0.1836072678 - - -
3 Hb_169488_010 0.2241526642 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
4 Hb_005063_070 0.2275425613 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
5 Hb_002365_010 0.2434280482 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
6 Hb_003702_050 0.2451924712 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
7 Hb_069868_010 0.2468273905 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
8 Hb_001951_280 0.251131919 - - -
9 Hb_063511_010 0.2749639676 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
10 Hb_000832_240 0.3010329033 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000003_690 0.3019162218 - - -
12 Hb_001981_080 0.3023984158 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
13 Hb_005222_010 0.303051962 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
14 Hb_001544_020 0.3049317029 - - -
15 Hb_072775_010 0.3061114436 - - 60S ribosomal L37-3 -like protein [Gossypium arboreum]
16 Hb_015091_010 0.307752757 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
17 Hb_000002_030 0.3087873712 - - -
18 Hb_126398_010 0.3183259464 - - -
19 Hb_003116_020 0.3183451523 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
20 Hb_000252_140 0.3236328944 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_157340_010 Hb_157340_010 Hb_005595_020 Hb_005595_020 Hb_157340_010--Hb_005595_020 Hb_169488_010 Hb_169488_010 Hb_157340_010--Hb_169488_010 Hb_005063_070 Hb_005063_070 Hb_157340_010--Hb_005063_070 Hb_002365_010 Hb_002365_010 Hb_157340_010--Hb_002365_010 Hb_003702_050 Hb_003702_050 Hb_157340_010--Hb_003702_050 Hb_069868_010 Hb_069868_010 Hb_157340_010--Hb_069868_010 Hb_005595_020--Hb_169488_010 Hb_072775_010 Hb_072775_010 Hb_005595_020--Hb_072775_010 Hb_005595_020--Hb_003702_050 Hb_001951_280 Hb_001951_280 Hb_005595_020--Hb_001951_280 Hb_005595_020--Hb_002365_010 Hb_169488_010--Hb_003702_050 Hb_169488_010--Hb_001951_280 Hb_063511_010 Hb_063511_010 Hb_169488_010--Hb_063511_010 Hb_001544_020 Hb_001544_020 Hb_169488_010--Hb_001544_020 Hb_015091_010 Hb_015091_010 Hb_169488_010--Hb_015091_010 Hb_000003_690 Hb_000003_690 Hb_169488_010--Hb_000003_690 Hb_005063_070--Hb_001951_280 Hb_005063_070--Hb_063511_010 Hb_000107_640 Hb_000107_640 Hb_005063_070--Hb_000107_640 Hb_005063_070--Hb_015091_010 Hb_000348_040 Hb_000348_040 Hb_005063_070--Hb_000348_040 Hb_000002_030 Hb_000002_030 Hb_002365_010--Hb_000002_030 Hb_002365_010--Hb_000003_690 Hb_005222_010 Hb_005222_010 Hb_002365_010--Hb_005222_010 Hb_000316_090 Hb_000316_090 Hb_002365_010--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_002365_010--Hb_034579_010 Hb_075642_010 Hb_075642_010 Hb_002365_010--Hb_075642_010 Hb_003702_050--Hb_063511_010 Hb_003702_050--Hb_001951_280 Hb_003702_050--Hb_000003_690 Hb_126398_010 Hb_126398_010 Hb_003702_050--Hb_126398_010 Hb_003702_050--Hb_015091_010 Hb_003621_010 Hb_003621_010 Hb_069868_010--Hb_003621_010 Hb_000800_100 Hb_000800_100 Hb_069868_010--Hb_000800_100 Hb_000252_140 Hb_000252_140 Hb_069868_010--Hb_000252_140 Hb_008202_030 Hb_008202_030 Hb_069868_010--Hb_008202_030 Hb_002046_030 Hb_002046_030 Hb_069868_010--Hb_002046_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 4.25213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.804562 1.28335 0 0.603843 0

CAGE analysis