Hb_005595_020

Information

Type -
Description -
Location Contig5595: 55885-56372
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005595_020 0.0 - - -
2 Hb_157340_010 0.1836072678 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
3 Hb_169488_010 0.2364568183 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
4 Hb_072775_010 0.2524578082 - - 60S ribosomal L37-3 -like protein [Gossypium arboreum]
5 Hb_003702_050 0.256710955 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
6 Hb_001951_280 0.2657700585 - - -
7 Hb_002365_010 0.2700965583 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
8 Hb_096490_010 0.2838405899 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
9 Hb_005063_070 0.2860121056 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
10 Hb_102699_010 0.2864141343 desease resistance Gene Name: NB-ARC NBS-LRR type disease resistance protein [Populus trichocarpa]
11 Hb_063511_010 0.2888835835 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
12 Hb_007044_150 0.2928418683 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Jatropha curcas]
13 Hb_171529_010 0.2984872963 - - -
14 Hb_069868_010 0.303866462 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
15 Hb_000003_690 0.3080485961 - - -
16 Hb_005222_010 0.3082850806 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
17 Hb_000832_240 0.3095419715 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001981_080 0.3097280203 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
19 Hb_001544_020 0.312825483 - - -
20 Hb_003695_010 0.3180633478 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_005595_020 Hb_005595_020 Hb_157340_010 Hb_157340_010 Hb_005595_020--Hb_157340_010 Hb_169488_010 Hb_169488_010 Hb_005595_020--Hb_169488_010 Hb_072775_010 Hb_072775_010 Hb_005595_020--Hb_072775_010 Hb_003702_050 Hb_003702_050 Hb_005595_020--Hb_003702_050 Hb_001951_280 Hb_001951_280 Hb_005595_020--Hb_001951_280 Hb_002365_010 Hb_002365_010 Hb_005595_020--Hb_002365_010 Hb_157340_010--Hb_169488_010 Hb_005063_070 Hb_005063_070 Hb_157340_010--Hb_005063_070 Hb_157340_010--Hb_002365_010 Hb_157340_010--Hb_003702_050 Hb_069868_010 Hb_069868_010 Hb_157340_010--Hb_069868_010 Hb_169488_010--Hb_003702_050 Hb_169488_010--Hb_001951_280 Hb_063511_010 Hb_063511_010 Hb_169488_010--Hb_063511_010 Hb_001544_020 Hb_001544_020 Hb_169488_010--Hb_001544_020 Hb_015091_010 Hb_015091_010 Hb_169488_010--Hb_015091_010 Hb_000003_690 Hb_000003_690 Hb_169488_010--Hb_000003_690 Hb_056531_040 Hb_056531_040 Hb_072775_010--Hb_056531_040 Hb_166548_010 Hb_166548_010 Hb_072775_010--Hb_166548_010 Hb_002352_040 Hb_002352_040 Hb_072775_010--Hb_002352_040 Hb_001981_080 Hb_001981_080 Hb_072775_010--Hb_001981_080 Hb_102699_010 Hb_102699_010 Hb_072775_010--Hb_102699_010 Hb_003702_050--Hb_063511_010 Hb_003702_050--Hb_001951_280 Hb_003702_050--Hb_000003_690 Hb_126398_010 Hb_126398_010 Hb_003702_050--Hb_126398_010 Hb_003702_050--Hb_015091_010 Hb_001951_280--Hb_063511_010 Hb_001951_280--Hb_015091_010 Hb_000348_040 Hb_000348_040 Hb_001951_280--Hb_000348_040 Hb_001951_280--Hb_005063_070 Hb_000002_030 Hb_000002_030 Hb_002365_010--Hb_000002_030 Hb_002365_010--Hb_000003_690 Hb_005222_010 Hb_005222_010 Hb_002365_010--Hb_005222_010 Hb_000316_090 Hb_000316_090 Hb_002365_010--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_002365_010--Hb_034579_010 Hb_075642_010 Hb_075642_010 Hb_002365_010--Hb_075642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.427477 0 0 4.70308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.856525 1.36819 0 0.321843 0

CAGE analysis