Hb_000002_030

Information

Type -
Description -
Location Contig2: 47786-48298
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20061: 47965-55223 , PASA_asmbl_20062: 48135-55223 , PASA_asmbl_20063: 47899-48598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_030 0.0 - - -
2 Hb_032531_050 0.1534231241 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
3 Hb_000316_090 0.1544650175 - - -
4 Hb_034579_010 0.164444902 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
5 Hb_002365_010 0.16576724 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
6 Hb_101151_030 0.1725628516 - - -
7 Hb_001235_060 0.1745952877 - - -
8 Hb_005933_010 0.1760612036 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
9 Hb_001691_160 0.1761653694 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000805_300 0.178117422 - - -
11 Hb_000248_030 0.1788914931 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
12 Hb_032531_060 0.1795304238 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
13 Hb_001454_110 0.1871196222 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
14 Hb_032531_040 0.2024653166 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
15 Hb_145827_010 0.2035636597 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
16 Hb_096490_010 0.2074870288 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
17 Hb_000248_010 0.215785359 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
18 Hb_000204_020 0.2238039795 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
19 Hb_122567_020 0.2253447572 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
20 Hb_056531_040 0.2260774407 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]

Gene co-expression network

sample Hb_000002_030 Hb_000002_030 Hb_032531_050 Hb_032531_050 Hb_000002_030--Hb_032531_050 Hb_000316_090 Hb_000316_090 Hb_000002_030--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_101151_030 Hb_101151_030 Hb_000002_030--Hb_101151_030 Hb_001235_060 Hb_001235_060 Hb_000002_030--Hb_001235_060 Hb_032531_040 Hb_032531_040 Hb_032531_050--Hb_032531_040 Hb_001454_110 Hb_001454_110 Hb_032531_050--Hb_001454_110 Hb_032531_050--Hb_000316_090 Hb_000805_300 Hb_000805_300 Hb_032531_050--Hb_000805_300 Hb_032531_050--Hb_034579_010 Hb_000316_090--Hb_034579_010 Hb_145827_010 Hb_145827_010 Hb_000316_090--Hb_145827_010 Hb_000684_480 Hb_000684_480 Hb_000316_090--Hb_000684_480 Hb_001579_040 Hb_001579_040 Hb_000316_090--Hb_001579_040 Hb_032531_060 Hb_032531_060 Hb_034579_010--Hb_032531_060 Hb_005731_140 Hb_005731_140 Hb_034579_010--Hb_005731_140 Hb_124141_010 Hb_124141_010 Hb_034579_010--Hb_124141_010 Hb_005933_010 Hb_005933_010 Hb_034579_010--Hb_005933_010 Hb_168737_010 Hb_168737_010 Hb_034579_010--Hb_168737_010 Hb_000003_690 Hb_000003_690 Hb_002365_010--Hb_000003_690 Hb_005222_010 Hb_005222_010 Hb_002365_010--Hb_005222_010 Hb_002365_010--Hb_000316_090 Hb_002365_010--Hb_034579_010 Hb_075642_010 Hb_075642_010 Hb_002365_010--Hb_075642_010 Hb_101151_030--Hb_000805_300 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_101151_030--Hb_001454_110 Hb_101151_030--Hb_001235_060 Hb_001235_060--Hb_005933_010 Hb_000248_030 Hb_000248_030 Hb_001235_060--Hb_000248_030 Hb_000248_010 Hb_000248_010 Hb_001235_060--Hb_000248_010 Hb_122567_020 Hb_122567_020 Hb_001235_060--Hb_122567_020 Hb_001235_060--Hb_000805_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77179 0 0 2.73243 1.05239 68.6637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46985 5.49554 2.10167 2.75091 0.5665

CAGE analysis