Hb_032531_050

Information

Type -
Description -
Location Contig32531: 66682-68724
Sequence    

Annotation

kegg
ID cic:CICLE_v10003980mg
description hypothetical protein
nr
ID XP_006432017.1
description hypothetical protein CICLE_v10003980mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SWT8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003980mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34281: 37242-71735 , PASA_asmbl_34282: 37343-71630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032531_050 0.0 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
2 Hb_032531_040 0.1450428715 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
3 Hb_000002_030 0.1534231241 - - -
4 Hb_001454_110 0.1548244947 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
5 Hb_000316_090 0.167814294 - - -
6 Hb_000805_300 0.185645316 - - -
7 Hb_034579_010 0.2013753648 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
8 Hb_101151_030 0.204713702 - - -
9 Hb_032531_060 0.2111904408 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
10 Hb_174005_010 0.2204793573 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
11 Hb_000903_030 0.2215255244 - - -
12 Hb_017134_020 0.2235448831 - - -
13 Hb_000248_030 0.2266660701 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
14 Hb_005933_010 0.2270262144 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
15 Hb_002365_010 0.2279507727 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
16 Hb_000951_050 0.2316125048 - - -
17 Hb_001579_040 0.2401417218 - - -
18 Hb_079978_010 0.2406073081 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
19 Hb_000684_480 0.2431036053 transcription factor TF Family: Orphans -
20 Hb_002988_020 0.2473175154 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]

Gene co-expression network

sample Hb_032531_050 Hb_032531_050 Hb_032531_040 Hb_032531_040 Hb_032531_050--Hb_032531_040 Hb_000002_030 Hb_000002_030 Hb_032531_050--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_032531_050--Hb_001454_110 Hb_000316_090 Hb_000316_090 Hb_032531_050--Hb_000316_090 Hb_000805_300 Hb_000805_300 Hb_032531_050--Hb_000805_300 Hb_034579_010 Hb_034579_010 Hb_032531_050--Hb_034579_010 Hb_032531_040--Hb_001454_110 Hb_032531_040--Hb_000805_300 Hb_174005_010 Hb_174005_010 Hb_032531_040--Hb_174005_010 Hb_000589_320 Hb_000589_320 Hb_032531_040--Hb_000589_320 Hb_001579_040 Hb_001579_040 Hb_032531_040--Hb_001579_040 Hb_000002_030--Hb_000316_090 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_101151_030 Hb_101151_030 Hb_000002_030--Hb_101151_030 Hb_001235_060 Hb_001235_060 Hb_000002_030--Hb_001235_060 Hb_001454_110--Hb_000805_300 Hb_059952_010 Hb_059952_010 Hb_001454_110--Hb_059952_010 Hb_001454_110--Hb_001579_040 Hb_001454_110--Hb_101151_030 Hb_000316_090--Hb_034579_010 Hb_145827_010 Hb_145827_010 Hb_000316_090--Hb_145827_010 Hb_000684_480 Hb_000684_480 Hb_000316_090--Hb_000684_480 Hb_000316_090--Hb_001579_040 Hb_122567_020 Hb_122567_020 Hb_000805_300--Hb_122567_020 Hb_000805_300--Hb_101151_030 Hb_005933_010 Hb_005933_010 Hb_000805_300--Hb_005933_010 Hb_000805_300--Hb_059952_010 Hb_032531_060 Hb_032531_060 Hb_034579_010--Hb_032531_060 Hb_005731_140 Hb_005731_140 Hb_034579_010--Hb_005731_140 Hb_124141_010 Hb_124141_010 Hb_034579_010--Hb_124141_010 Hb_034579_010--Hb_005933_010 Hb_168737_010 Hb_168737_010 Hb_034579_010--Hb_168737_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.68132 0 0.17252 16.7593 1.96214 320.06
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8707 15.4818 21.504 1.72018 2.1604

CAGE analysis