Hb_174005_010

Information

Type -
Description -
Location Contig174005: 879-1127
Sequence    

Annotation

kegg
ID egr:104440983
description interferon-induced guanylate-binding protein 1-like
nr
ID KCW76202.1
description hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CCU9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00590 PE=4 SV=1
Gene Ontology
ID GO:0005730
description guanylate-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174005_010 0.0 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
2 Hb_053582_010 0.1678931469 - - -
3 Hb_000005_210 0.1711944719 - - -
4 Hb_000041_170 0.1711944719 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
5 Hb_000047_040 0.1711944719 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
6 Hb_000072_260 0.1711944719 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
7 Hb_000081_170 0.1711944719 - - -
8 Hb_000088_250 0.1711944719 - - -
9 Hb_000110_220 0.1711944719 - - -
10 Hb_000110_360 0.1711944719 - - -
11 Hb_000111_510 0.1711944719 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000122_170 0.1711944719 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
13 Hb_000122_180 0.1711944719 - - -
14 Hb_000130_150 0.1711944719 - - -
15 Hb_000139_020 0.1711944719 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000140_180 0.1711944719 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000141_140 0.1711944719 - - PREDICTED: uncharacterized protein LOC104890406 [Beta vulgaris subsp. vulgaris]
18 Hb_000156_050 0.1711944719 - - -
19 Hb_000241_020 0.1711944719 - - -
20 Hb_000249_010 0.1711944719 - - hypothetical protein JCGZ_26531 [Jatropha curcas]

Gene co-expression network

sample Hb_174005_010 Hb_174005_010 Hb_053582_010 Hb_053582_010 Hb_174005_010--Hb_053582_010 Hb_000005_210 Hb_000005_210 Hb_174005_010--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_174005_010--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_174005_010--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_174005_010--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_174005_010--Hb_000081_170 Hb_101151_030 Hb_101151_030 Hb_053582_010--Hb_101151_030 Hb_001377_440 Hb_001377_440 Hb_053582_010--Hb_001377_440 Hb_000906_050 Hb_000906_050 Hb_053582_010--Hb_000906_050 Hb_086287_020 Hb_086287_020 Hb_053582_010--Hb_086287_020 Hb_056531_040 Hb_056531_040 Hb_053582_010--Hb_056531_040 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000088_250 Hb_000088_250 Hb_000005_210--Hb_000088_250 Hb_000110_220 Hb_000110_220 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000005_210--Hb_000110_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0276 3.44531 0 0 23.9273 6126.18
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
192.323 24.429 100.12 10.8696 3.85797

CAGE analysis